View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_203 (Length: 244)
Name: NF6865A_low_203
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_203 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 34955671 - 34955901
Alignment:
| Q |
16 |
tggacatcactcataagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcat |
115 |
Q |
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| T |
34955671 |
tggacatcactcataagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcat |
34955770 |
T |
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| Q |
116 |
cggatcttgctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataatagga |
213 |
Q |
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| T |
34955771 |
cggatcttgctgagatgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataatagga |
34955870 |
T |
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| Q |
214 |
agtcatatgccgtatattatatcatttattt |
244 |
Q |
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| T |
34955871 |
agtcatatgccgtatattatatcatttattt |
34955901 |
T |
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Back To:
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
35 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
134 |
Q |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
135 |
caagtttcctggaacctgca |
154 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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