View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_211 (Length: 242)
Name: NF6865A_low_211
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_211 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 23840431 - 23840619
Alignment:
| Q |
34 |
ggtttaaataaagatttatgacagctatgtaggctgtgacataacggttgcatcagttatatctaatcgcgattctacacaatattaaggatcgcaacac |
133 |
Q |
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| T |
23840431 |
ggtttaaataaagacttgcgacagctatctagcttgtgacataatggttgcatcagttatatctaaccgcgattctacgcaatattaaggatcgcaacac |
23840530 |
T |
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| Q |
134 |
aaagacaacccgttatacgaagtacaaagactaaaaaagacact--gnnnnnnngttaccttgtcatcgatgaatttcgaccaaaatcg |
220 |
Q |
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| T |
23840531 |
gaagacaacgtgttataggaagtacatatactaaaaaaaatactaaaagaagaagttaccttgtcatcgatgaatttcgaccaaaatcg |
23840619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 23861237 - 23861270
Alignment:
| Q |
187 |
ttaccttgtcatcgatgaatttcgaccaaaatcg |
220 |
Q |
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| T |
23861237 |
ttaccttgtcatcgatgaatttcgaccaaaatcg |
23861270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 23844033 - 23844067
Alignment:
| Q |
186 |
gttaccttgtcatcgatgaatttcgaccaaaatcg |
220 |
Q |
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| T |
23844033 |
gttaccttgtcatcgatgaattttgaccaaaatcg |
23844067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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