View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_220 (Length: 240)
Name: NF6865A_low_220
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_220 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 23915210 - 23915348
Alignment:
| Q |
83 |
tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtca |
182 |
Q |
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| T |
23915210 |
tgaggagaatggagaatagacgtta----gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtca |
23915305 |
T |
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| Q |
183 |
atgaatgtagtcagaaagaaattcattcaccattaatattctt |
225 |
Q |
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| T |
23915306 |
atgaatgtagtcagaaagaaattcattcaccattaatattctt |
23915348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 23915125 - 23915185
Alignment:
| Q |
21 |
ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt |
81 |
Q |
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| T |
23915125 |
ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt |
23915185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
| Q |
23 |
aaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt |
81 |
Q |
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| T |
23922776 |
aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt |
23922834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
| Q |
83 |
tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtacc |
146 |
Q |
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| T |
23922872 |
tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc |
23922935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 23922954 - 23923014
Alignment:
| Q |
165 |
ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattctt |
225 |
Q |
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| T |
23922954 |
ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattctt |
23923014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 25803226 - 25803278
Alignment:
| Q |
21 |
ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccat |
73 |
Q |
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| T |
25803226 |
ataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat |
25803278 |
T |
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