View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_223 (Length: 240)
Name: NF6865A_low_223
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_223 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
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|
| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (12 HSPs) |
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| [»] scaffold0053 (2 HSPs) |
| | |
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| [»] scaffold0045 (1 HSPs) |
| | |
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| [»] scaffold0012 (1 HSPs) |
| | |
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| [»] scaffold0510 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 184728 - 184964
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
184728 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccctataaagaccttttgatccatgctatt-gtgctttttgagataatatttggatgg |
184826 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
184827 |
aaacctaacttaatcaggatgtttgcttgattgttggatgtgtgtt-attaccctcatttgttgattattgcgttgtctcatctacttgcaaagaagtgt |
184925 |
T |
|
| Q |
202 |
gttaggcgtggttcatagatagtcatgtttatgttttga |
240 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
184926 |
gttaggtgtggttcatagacgatcatgtttttgttttga |
184964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 29226256 - 29226492
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||| ||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
29226256 |
tcccacatatgacatttctcttgtagcccgaccaagttataaccctataaagaccttttgatccatgct-tctgtgctttttgagataatatttggatgg |
29226354 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||||||||| |||| |
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|
| T |
29226355 |
aaacctaacttaatcaagatgttagcttgattgttggatgtgtgttt-ttaccctcatttgttgattgttgctttgtctcatctacttgcaaagaagtgt |
29226453 |
T |
|
| Q |
202 |
gttaggcgtggttcatagatagtcatgtttatgttttga |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
29226454 |
gttaggtgtggttcatagatagtcatgtttatattttga |
29226492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 29339555 - 29339791
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||| ||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
29339555 |
tcccacatatgacatttctcttgtagcccgaccaagttataaccctataaagaccttttgatccatgct-tctgtgctttttgagataatatttggatgg |
29339653 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||||||||| |||| |
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|
| T |
29339654 |
aaacctaacttaatcaagatgttagcttgattgttggatgtgtgttt-ttaccctcatttgttgattgttgctttgtctcatctacttgcaaagaagtgt |
29339752 |
T |
|
| Q |
202 |
gttaggcgtggttcatagatagtcatgtttatgttttga |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
29339753 |
gttaggtgtggttcatagatagtcatgtttatattttga |
29339791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 2159344 - 2159185
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
2159344 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
2159247 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| ||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
2159246 |
catataacttgatttggatgttaacttgattgtcggatgtgtgttcataaccctcactcatt |
2159185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 34839745 - 34839904
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
34839745 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
34839842 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
34839843 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
34839904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 23384359 - 23384575
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| ||| | |||||| ||||||| ||||||||||||||| |
|
|
| T |
23384359 |
tcccacatatgacatttcttttgtagcccggccaagttataaccctatagagaccttttgatccatgtt-tttgtgttttttgagataatatttggatgg |
23384457 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
23384458 |
aaacctaacttaatcaagatgttagcttgattgttggatgtgtgtt-attaccctcatttgttgattattgctttgtctcatctacttgcaaagaagtgt |
23384556 |
T |
|
| Q |
202 |
gttaggcgtggttcataga |
220 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
23384557 |
gttaggtgtggttcataga |
23384575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 22096833 - 22097045
Alignment:
| Q |
10 |
atgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatggacacataa |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || | ||||||||||||| | | |||||||||||||| |||||||||||||||| || || |
|
|
| T |
22096833 |
atgacatttcttttgtagcccggccaagttataaccctaaaaagaccttttgatccacacc-tttgtgctttttgagataatatttggatggaaaccta- |
22096930 |
T |
|
| Q |
110 |
cttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgtgttaggcg |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| | | |
|
|
| T |
22096931 |
----------------gcttgattgttggatgtgtgtttattaccctcatttgttgattattgctttgtctcatctacttgcaaagaagtgtgttaagtg |
22097014 |
T |
|
| Q |
210 |
tggttcatagatagtcatgtttatgttttga |
240 |
Q |
| |
|
|||| |||||| |||||||| |||||||| |
|
|
| T |
22097015 |
tggtacatagacgttcatgtttttgttttga |
22097045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 9575494 - 9575654
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
9575494 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgttttttatgctttttgaaatgataattggatgga |
9575592 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || | |||||| |||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
9575593 |
catataacttgatttgtatgttaacttgattgctggatgtgtgttcataaccctcactcatt |
9575654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 352004 - 351788
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||||||||| || | ||||||||||||| ||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
352004 |
tcccacatatgacatttttcttgtagcccggccaagttataaccctataaagaccttttgatccatgct-tctgtgctttttgagataatatttggatgg |
351906 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || |||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
351905 |
aaacctaacttaatcaggacgtttgcttgattgttggatgtgtgtt-attaccctcatttgttgattattgcgttgtctcatctacttgcaaagaagtgt |
351807 |
T |
|
| Q |
202 |
gttaggcgtggttcataga |
220 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
351806 |
gttaggtgtggttcataga |
351788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 27353053 - 27353289
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
||||| ||||||||||| | |||||||| | ||||| ||||||| || | ||||||||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
27353053 |
tcccatatatgacatttttcttgtagcctggccaagctataaccctataaagaccttttgatccatgct-tttgtgctttttgagataatatttggatgg |
27353151 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
27353152 |
aaacctaacttaatcaggatgtttgcttgattgttggatgtgtgtt-attaccctcatttgttgattattgcgttgtctcatctacttgcaaagaagtgt |
27353250 |
T |
|
| Q |
202 |
gttaggcgtggttcatagatagtcatgtttatgttttga |
240 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
27353251 |
gttaggtgtggttcatagacgatcatgtttttgttttga |
27353289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36738091 - 36737870
Alignment:
| Q |
1 |
atcccacatatgacatttcttttgtagcccgaccaagttataacctta-gagagaccttttgatctatgctatttgtgctttttgaaataatatttggat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| || || ||||||||||||| ||||| |||||| || |||||||||| |
|
|
| T |
36738091 |
atcccacatatgacatttcttttgtagcctggccaagttataaccctacgaaagaccttttgatccatgct---------ttttgagatgatatttggat |
36738001 |
T |
|
| Q |
100 |
ggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcattacc-ctcattcattgattattactttgtctcatctacttgcaaagacg |
198 |
Q |
| |
|
| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| | ||| |||| | || ||| |||||| | |
|
|
| T |
36738000 |
gaacacctaacttaatcagaatgttagcttgattgttggatgtgtgtacattacctctcattcattg--ttttatcttgttttattggcttacaaagaag |
36737903 |
T |
|
| Q |
199 |
tgtgttaggcgtggttcatagatagtcatgttt |
231 |
Q |
| |
|
||||||||| |||||||||||||| | |||||| |
|
|
| T |
36737902 |
tgtgttaggtgtggttcatagataataatgttt |
36737870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 8011809 - 8011968
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
8011809 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
8011906 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
8011907 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
8011968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 14478551 - 14478788
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
|||||||||||||| |||| |||||||| | ||||||||||||| |||| ||||||||||||| ||||| ||||||| |||||| || |||||||||||| |
|
|
| T |
14478551 |
tcccacatatgacacttctattgtagccaggccaagttataaccctagaaagaccttttgatccatgct-tttgtgccttttgagatgatatttggatgg |
14478649 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
| || |||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
14478650 |
aaacctaacctaatcatgatgttagattgattgttggatgtgtgttcattaccctcatttgttgattattgctttgtctcatctacttgcaaagaagtgt |
14478749 |
T |
|
| Q |
202 |
gttaggcgtggttcatagatagtcatgtttatgttttga |
240 |
Q |
| |
|
||||| ||| |||||||| |||||||| |||||||| |
|
|
| T |
14478750 |
attaggtgtgattcatagacgatcatgtttttgttttga |
14478788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24162460 - 24162233
Alignment:
| Q |
1 |
atcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatg |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||| ||||| | |||||||||||| | |||||||| || |
|
|
| T |
24162460 |
atcccacttatgacagttcttttgtagcccggccaagttataactctagaaagaccttttgatccatgct-tctgtgctttttgagacgatatttggttg |
24162362 |
T |
|
| Q |
101 |
gacacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattg--attattactttgtctcatctacttgcaaagacg |
198 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||| |||| || | |||||||| ||||| | |
|
|
| T |
24162361 |
gacaaataacttaatcaggatgttagcatgattgttggatgtgtgttcgttaccctcattaattggtattgttacattct---atctacttttaaagaag |
24162265 |
T |
|
| Q |
199 |
tgtgttaggcgtggttcatagatagtcatgtt |
230 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |
|
|
| T |
24162264 |
tgtgttaggtgtggttcatagacagtcatgtt |
24162233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 22872044 - 22871830
Alignment:
| Q |
1 |
atcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatg |
100 |
Q |
| |
|
|||||||||||| | |||||||| ||||| |||||||| |||| || | |||| |||| ||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
22872044 |
atcccacatatgtcctttcttttttagccgagccaagttacaaccctaaaaagacattttaatccatgct-tttgtgctttttgagataatatttggatg |
22871946 |
T |
|
| Q |
101 |
gacacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtg |
200 |
Q |
| |
|
||||| |||||| |||| ||||||||| ||||||| |||||||||||| | | ||||| ||||||||| |||||||| |||| ||||| |||||| ||| |
|
|
| T |
22871945 |
gacacgtaacttgatcaagatgttagcatgattgtcggatgtgtgttcgtaatcctcactcattgatt-gtactttgtttcatttacttccaaagaagtg |
22871847 |
T |
|
| Q |
201 |
tgttaggcgtggttcat |
217 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
22871846 |
tgttaggtgtcgttcat |
22871830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 10805773 - 10805983
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||||| |||||||||||| | || ||||||||||||| |
|
|
| T |
10805773 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgct-tttgtgctttttaagatgatatttggatgga |
10805870 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgtg |
202 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||| ||||||||||||| ||||||| || ||||| | | ||||| |||| ||||| ||||| ||||| |
|
|
| T |
10805871 |
cacataacttgatcgggatgttaacttgattgtcggatgtgtgttcaaaaccctcacacaatgatt-tcattttgtttcatttacttataaagaagtgtg |
10805969 |
T |
|
| Q |
203 |
ttaggcgtggttca |
216 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
10805970 |
ttaggtgtggttca |
10805983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 4717029 - 4717188
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
4717029 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
4717126 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
4717127 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
4717188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 34650533 - 34650374
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
34650533 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
34650436 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
34650435 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
34650374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 4025150 - 4025309
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | |||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
4025150 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatgcatgtt-tttatgctttttgaaatgataattggatgga |
4025247 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
4025248 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
4025309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 4736816 - 4736975
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| ||||||||| |||| | | ||||||||||||| ||| | | | | ||||||||||| ||| ||||||||| |
|
|
| T |
4736816 |
cccacaaatgccaattcttttgtagcctaaccaagttacaaccctcaa-agaccttttgatccatgtt-tctatactttttgaaatgataattggatgga |
4736913 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
4736914 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
4736975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 7068194 - 7068353
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| ||||||||||||| ||| || |||||| |
|
|
| T |
7068194 |
cccacaaatgtcaattcttttgtagcctagccaagttacaaccctcaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattagatgga |
7068291 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
7068292 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
7068353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 21261071 - 21261230
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
21261071 |
cccacaaatgtcaattcttttgtagcctagccaagttacaaccctcaa-agaccttttgatccatgtt-tttatgccttttgaaatgataattggatgga |
21261168 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||| ||||||| ||||||| ||||| |
|
|
| T |
21261169 |
catataacttgatatggatgttaacttgattgccggatgtttgttcataaccctcactcatt |
21261230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 14121103 - 14121159
Alignment:
| Q |
94 |
ttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcat |
150 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
14121103 |
ttggatggacacataacctgatcaggatgttagcatgagtgtcggatgtgtgttcat |
14121159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 10575347 - 10575386
Alignment:
| Q |
76 |
tgctttttgaaataatatttggatggacacataacttaat |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10575347 |
tgctttttgagataatatttggatggacacataacttaat |
10575386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 27952486 - 27952265
Alignment:
| Q |
9 |
tatgacatttcttttgtagcccgaccaagttataacctta-gagagaccttttgatctatgctatttgtgctttttgaaataatatttggatggacacat |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
27952486 |
tatgtcatttcttttgtagcccgaccaagttataaccttaagaaagacctttggatccatgctttttgtgctttttgagatg-tatttggatggacacat |
27952388 |
T |
|
| Q |
108 |
aacttaatcaggatgttagcttgattgttggatgtgtgttcatta-ccctcattcattgattattactttgtctcatctacttgcaaagacgtgtgttag |
206 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||||| |||||| |||||| || ||||||||| | |||||||| |||||| |||| |||| |
|
|
| T |
27952387 |
aacttaatcagaatgttagattgattgttggatgtgtgtacattacccctcactcattg-tttttactttgttttatctacttacaaagaagtgtcttag |
27952289 |
T |
|
| Q |
207 |
gcgtggttcatagatagtcatgtt |
230 |
Q |
| |
|
| |||||||||||||| ||||||| |
|
|
| T |
27952288 |
gtgtggttcatagataatcatgtt |
27952265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 12188434 - 12188660
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||| || | ||||||||||||| ||||| | ||| |||||| | | |||||||| ||| |
|
|
| T |
12188434 |
tcccacatatgacatttttcttgtagcttggccaagttataaccctataaagaccttttgatccatgct-tctgtcctttttaagaagatatttggttgg |
12188532 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||| | | | | |||||||| ||||| |||| |
|
|
| T |
12188533 |
acacataacttaatcaggatgttagcatgattgttggatgtgtgttcattaccctcactaattg-gtattgttatattttatctacttttaaagaagtgt |
12188631 |
T |
|
| Q |
202 |
gttaggcgtggttcatagatagtcatgtt |
230 |
Q |
| |
|
|||| | |||||||||||| ||||||||| |
|
|
| T |
12188632 |
gttaagtgtggttcatagacagtcatgtt |
12188660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 12696271 - 12696046
Alignment:
| Q |
2 |
tcccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgg |
101 |
Q |
| |
|
||||||||||||||||| | |||||||| | ||||||||||||| || | ||||||||||||| ||||| ||||||||| |||| || |||||| | ||| |
|
|
| T |
12696271 |
tcccacatatgacatttttcttgtagcctggccaagttataaccctataaagaccttttgatccatgct-tttgtgcttgttgagatgatatttagttgg |
12696173 |
T |
|
| Q |
102 |
acacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattg--attattactttgtctcatctacttgcaaagacgt |
199 |
Q |
| |
|
||||||||| |||||||| || ||| |||||||||||||||||||||||||||||| | |||| ||| ||| || | |||||||| ||||| || |
|
|
| T |
12696172 |
acacataacctaatcagggtg-aagcatgattgttggatgtgtgttcattaccctcactgattggtattgttatattct---atctacttttaaagaagt |
12696077 |
T |
|
| Q |
200 |
gtgttaggcgtggttcatagatagtcatgtt |
230 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |
|
|
| T |
12696076 |
gtgttaggtgtggttcatagacagtcatgtt |
12696046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 8191390 - 8191549
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
8191390 |
cccacaaatgtcaattcttttgtagcctagccaagttacaaccctcaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
8191487 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
8191488 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
8191549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 48351972 - 48352131
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
48351972 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
48352069 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
48352070 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
48352131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 1942369 - 1942210
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || |||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| || ||||||||| ||| ||||||||| |
|
|
| T |
1942369 |
cccacaaatgtcaattcttttgtagcccagccaagttacaaccctcaa-agaccttttgatccatgtt-tttatgtcttttgaaatgataattggatgga |
1942272 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || ||| |||| |||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
1942271 |
catataacttgatgtggacgttaacttgattgctggatgtgtgttcataaccctcactcatt |
1942210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 10860723 - 10860834
Alignment:
| Q |
52 |
agaccttttgatctatgctatttgtgctttttgaaataatatttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcatt |
151 |
Q |
| |
|
||||||||||||| ||| | ||| ||| ||||||||| ||| ||||||||||||||||||| || |||||||| ||||||||| || ||| ||||||| |
|
|
| T |
10860723 |
agaccttttgatccatgtt-tttatgccttttgaaatgataattggatggacacataacttgatgtggatgttaacttgattgtcgggtgtatgttcata |
10860821 |
T |
|
| Q |
152 |
accctcattcatt |
164 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
10860822 |
acccttattcatt |
10860834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 14289368 - 14289282
Alignment:
| Q |
78 |
ctttttgaaataatatttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
14289368 |
ctttttgaaatgataattggatggacatataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
14289282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 1947419 - 1947497
Alignment:
| Q |
80 |
ttttgaaataatatttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctca |
158 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||| || ||| |||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
1947419 |
ttttgaaatgataattggatggacatataacttgatgtggacgttaacttgattgccggatgtgtgttcataaccctca |
1947497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 12098877 - 12098657
Alignment:
| Q |
5 |
cacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatggaca |
104 |
Q |
| |
|
|||||||| | ||||||||||| || ||| ||||||||| |||| ||||||||||||| ||||| ||| || ||||||| || ||||||||||| ||| |
|
|
| T |
12098877 |
cacatatgtcctttcttttgtatccgagccaggttataaccctagaaagaccttttgatccatgct-tttatgttttttgagatgatatttggatgaaca |
12098779 |
T |
|
| Q |
105 |
cataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcattgattattactttgtctcatctacttgcaaagacgtgtgtt |
204 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||||| |||| | ||||||| |
|
|
| T |
12098778 |
cataacttgatcaggatgttagcaggattgttggatgtgtgttcattaccctcactcaatgatta-tactttgtttcatctacttacaaaaaagtgtgtt |
12098680 |
T |
|
| Q |
205 |
aggcgtggttcatagatagtcat |
227 |
Q |
| |
|
||| |||||||||||||| |||| |
|
|
| T |
12098679 |
aggtgtggttcatagataatcat |
12098657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 666176 - 666232
Alignment:
| Q |
94 |
ttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcat |
150 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
666176 |
ttggatggacacataacctgatcaggatgttagcatgagtgtcggatgtgtgttcat |
666232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 51423 - 51264
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
51423 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
51326 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
51325 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
51264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 66489 - 66336
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | || ||||||||||||| ||| | ||| |||||||| |||| ||| ||||||||| |
|
|
| T |
66489 |
cccacaaatgtcaattcttttgtagcctagccaagttacaaccctcga-agaccttttgatccatgtt-tttatgctttttaaaatgataattggatgga |
66392 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctca |
158 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
66391 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctca |
66336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 29975692 - 29975533
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
29975692 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
29975595 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
29975594 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
29975533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 30020950 - 30021109
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
30020950 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
30021047 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
30021048 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
30021109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 2961678 - 2961519
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
2961678 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
2961581 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| || |||| ||||| |
|
|
| T |
2961580 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataactctcactcatt |
2961519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 22315549 - 22315390
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
22315549 |
cccacaaatgtcaattcttttgtagcctagccaagttacaaccctcaa-agaccttttgatccatgtt-tttatgccttttgaaatgataattggatgga |
22315452 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| ||||||||| |||| ||||||| ||||| |
|
|
| T |
22315451 |
catataacttcatgtggatgttaacttgattgccggatgtgtgctcataaccctcactcatt |
22315390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 34357617 - 34357705
Alignment:
| Q |
76 |
tgctttttgaaataatatttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
34357617 |
tgctttttgaaatgatgattggatggacatataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
34357705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 45017514 - 45017355
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||| ||| |||| || | ||||||||||||| ||| | ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
45017514 |
cccacaaatgtcctttcttttgtagccaagccaaattacaaccctaaa-agaccttttgatccatgtt-tttatgctttttgaaatgataattggatgga |
45017417 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccctcattcatt |
164 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
45017416 |
catataacttgatttggatgttaacttgattgccggatgtgtgttcataaccctcactcatt |
45017355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 39058228 - 39058339
Alignment:
| Q |
52 |
agaccttttgatctatgctatttgtgctttttgaaataatatttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcatt |
151 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||||||||| || ||||||||||| ||||||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
39058228 |
agaccttttgatccatgtt-tttatgctttttgaaatgatgattggatggacatataacttgatttggatgttaacttgattgccggatgtgtgttcata |
39058326 |
T |
|
| Q |
152 |
accctcattcatt |
164 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
39058327 |
accctcactcatt |
39058339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 41304031 - 41304182
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
41304031 |
cccacaaatgtcaattcttttgtagccaagccaagttacaacccttaa-agaccttttgatccatgtt-tttatgccttttgaaatgataattggatgga |
41304128 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccct |
156 |
Q |
| |
|
|| ||||||| || |||||||| ||||| | ||||| |||||||| ||||| |
|
|
| T |
41304129 |
catataacttgatgtggatgttaacttgacttcaggatgagtgttcataaccct |
41304182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 7694 - 7750
Alignment:
| Q |
94 |
ttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcat |
150 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||| |||||||| ||||| |
|
|
| T |
7694 |
ttggatggacacataacttgatcaggatgttagcatgagtgtcggatgtgtattcat |
7750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 203616 - 203560
Alignment:
| Q |
94 |
ttggatggacacataacttaatcaggatgttagcttgattgttggatgtgtgttcat |
150 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||| ||| |||||||| ||||| |
|
|
| T |
203616 |
ttggatggacacataacctgatcaggatgttagcatgagtgtcggatgtgtattcat |
203560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 7392 - 7543
Alignment:
| Q |
3 |
cccacatatgacatttcttttgtagcccgaccaagttataaccttagagagaccttttgatctatgctatttgtgctttttgaaataatatttggatgga |
102 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||| |||| | | ||||||||||||| ||| | ||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
7392 |
cccacaaatgtcaattcttttgtagccaagccaagttacaacccttaa-agaccttttgatccatgtt-tttatgccttttgaaatgataattggatgga |
7489 |
T |
|
| Q |
103 |
cacataacttaatcaggatgttagcttgattgttggatgtgtgttcattaccct |
156 |
Q |
| |
|
|| ||||||| || |||||||| ||||| | ||||| |||||||| ||||| |
|
|
| T |
7490 |
catataacttgatgtggatgttaacttgacttcaggatgagtgttcataaccct |
7543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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