View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_228 (Length: 238)
Name: NF6865A_low_228
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_228 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 28250309 - 28250089
Alignment:
| Q |
18 |
gacatcagatcaaaacaacgaagccttctacagttaattatcaatctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
117 |
Q |
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| T |
28250309 |
gacatcagatcaaaacaacgaagccttctagagttaattatcaatctcttcccttcggagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
28250210 |
T |
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| Q |
118 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgt |
217 |
Q |
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| T |
28250209 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgt |
28250110 |
T |
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| Q |
218 |
gatgtcattctcctacgacgg |
238 |
Q |
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| T |
28250109 |
gatgtcattctcctacgacgg |
28250089 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 32179846 - 32179733
Alignment:
| Q |
62 |
tctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaa |
161 |
Q |
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| T |
32179846 |
tctctttccgtcggagaaagctgcttttccgatcaacttcctctgctgtcttctccgttgtgctatctacctacgcgcctcaagcgcgtgcaagcgcgaa |
32179747 |
T |
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| Q |
162 |
ctcgagaaacgaat |
175 |
Q |
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| T |
32179746 |
ctcgagaagcgaat |
32179733 |
T |
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