View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_23 (Length: 427)

Name: NF6865A_low_23
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_23
NF6865A_low_23
[»] chr2 (15 HSPs)
chr2 (8-259)||(36444869-36445119)
chr2 (284-407)||(34392129-34392251)
chr2 (275-389)||(10163501-10163615)
chr2 (306-405)||(7381695-7381794)
chr2 (284-394)||(23863851-23863958)
chr2 (312-407)||(21603960-21604055)
chr2 (291-403)||(14565908-14566019)
chr2 (304-407)||(37357988-37358091)
chr2 (275-339)||(3668048-3668112)
chr2 (300-358)||(4779635-4779692)
chr2 (346-415)||(37811084-37811153)
chr2 (284-365)||(41095834-41095914)
chr2 (284-407)||(4775635-4775758)
chr2 (341-411)||(3668320-3668390)
chr2 (290-357)||(25275676-25275741)
[»] chr5 (18 HSPs)
chr5 (275-413)||(38010652-38010790)
chr5 (275-413)||(13478083-13478221)
chr5 (275-413)||(29989957-29990095)
chr5 (275-413)||(13086748-13086886)
chr5 (287-407)||(13015382-13015502)
chr5 (277-413)||(13421050-13421186)
chr5 (286-364)||(37881185-37881263)
chr5 (290-408)||(33858592-33858709)
chr5 (290-407)||(11607588-11607704)
chr5 (306-407)||(19357330-19357431)
chr5 (284-407)||(1826260-1826382)
chr5 (302-407)||(9827789-9827894)
chr5 (290-407)||(39570097-39570213)
chr5 (275-388)||(10292893-10293004)
chr5 (300-392)||(33271630-33271721)
chr5 (290-353)||(42148201-42148263)
chr5 (346-413)||(35622811-35622878)
chr5 (362-413)||(35622939-35622990)
[»] chr3 (24 HSPs)
chr3 (275-413)||(47186170-47186308)
chr3 (275-414)||(31187108-31187247)
chr3 (275-414)||(42664667-42664806)
chr3 (275-412)||(34029329-34029466)
chr3 (295-408)||(50934500-50934613)
chr3 (290-407)||(44380255-44380371)
chr3 (286-407)||(47426351-47426471)
chr3 (284-409)||(33509679-33509803)
chr3 (355-416)||(21963073-21963134)
chr3 (284-395)||(37742738-37742848)
chr3 (284-356)||(6022998-6023070)
chr3 (300-400)||(35094554-35094655)
chr3 (340-406)||(32319468-32319534)
chr3 (312-406)||(39498744-39498838)
chr3 (342-407)||(10018671-10018736)
chr3 (346-413)||(53440541-53440608)
chr3 (342-407)||(10179868-10179933)
chr3 (290-365)||(17466316-17466390)
chr3 (346-413)||(42273329-42273396)
chr3 (360-407)||(43689404-43689451)
chr3 (362-413)||(46489652-46489703)
chr3 (346-413)||(46489764-46489831)
chr3 (342-407)||(10123211-10123276)
chr3 (362-414)||(34955067-34955119)
[»] chr4 (21 HSPs)
chr4 (275-413)||(52012773-52012911)
chr4 (275-407)||(9799401-9799533)
chr4 (275-414)||(47943152-47943292)
chr4 (284-408)||(33249422-33249545)
chr4 (287-407)||(12473705-12473824)
chr4 (287-407)||(12528114-12528233)
chr4 (284-399)||(21260803-21260917)
chr4 (315-385)||(46719953-46720023)
chr4 (290-407)||(35869625-35869741)
chr4 (287-407)||(22343338-22343457)
chr4 (291-407)||(51811915-51812030)
chr4 (314-407)||(52910126-52910219)
chr4 (311-407)||(49999662-49999758)
chr4 (331-407)||(55590483-55590559)
chr4 (322-408)||(34829168-34829254)
chr4 (275-323)||(46720200-46720249)
chr4 (346-415)||(54277631-54277700)
chr4 (362-413)||(28092740-28092791)
chr4 (346-413)||(28092852-28092919)
chr4 (349-404)||(49998486-49998541)
chr4 (284-342)||(33174581-33174636)
[»] chr1 (15 HSPs)
chr1 (275-413)||(8809678-8809816)
chr1 (275-407)||(35998253-35998385)
chr1 (284-407)||(29119372-29119494)
chr1 (284-407)||(32676137-32676259)
chr1 (291-407)||(2569038-2569152)
chr1 (347-412)||(18056134-18056199)
chr1 (315-407)||(25161310-25161402)
chr1 (275-401)||(35534413-35534535)
chr1 (311-407)||(6223052-6223148)
chr1 (290-395)||(8462141-8462245)
chr1 (368-407)||(16679829-16679868)
chr1 (355-407)||(46435571-46435623)
chr1 (316-371)||(3688917-3688972)
chr1 (326-404)||(7214500-7214578)
chr1 (362-407)||(5581281-5581326)
[»] chr6 (7 HSPs)
chr6 (275-413)||(34245562-34245700)
chr6 (275-407)||(11113557-11113684)
chr6 (284-408)||(1211892-1212015)
chr6 (300-407)||(5403940-5404046)
chr6 (287-403)||(32644888-32645002)
chr6 (343-407)||(11753168-11753232)
chr6 (346-413)||(31030087-31030154)
[»] chr8 (8 HSPs)
chr8 (275-413)||(1514798-1514936)
chr8 (290-401)||(18168392-18168503)
chr8 (290-401)||(18631949-18632060)
chr8 (284-407)||(41179611-41179733)
chr8 (288-407)||(24337882-24338000)
chr8 (290-407)||(11254082-11254197)
chr8 (284-400)||(4708355-4708470)
chr8 (306-408)||(32825904-32826006)
[»] scaffold0032 (1 HSPs)
scaffold0032 (294-407)||(34195-34306)
[»] chr7 (5 HSPs)
chr7 (290-407)||(35341537-35341653)
chr7 (287-407)||(48250155-48250274)
chr7 (284-407)||(48072390-48072510)
chr7 (315-404)||(31306951-31307041)
chr7 (290-344)||(32694624-32694677)
[»] scaffold0229 (1 HSPs)
scaffold0229 (284-408)||(13053-13177)
[»] scaffold0263 (2 HSPs)
scaffold0263 (306-407)||(23168-23263)
scaffold0263 (362-407)||(23094-23139)
[»] scaffold0519 (1 HSPs)
scaffold0519 (290-407)||(11196-11311)
[»] scaffold0464 (1 HSPs)
scaffold0464 (346-407)||(6425-6486)
[»] scaffold0163 (1 HSPs)
scaffold0163 (368-413)||(28119-28164)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 36444869 - 36445119
Alignment:
Q  8 caatgagatggacatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatcat 107  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36444869 caatgagtgggagatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatcat 36444968  T
Q  108 ataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaacgtgagtgnnnnn 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         
T  36444969 ataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaatgtgagtg-aaaa 36445067  T
Q  208 nntatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 259  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445068 aatatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 36445119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 34392129 - 34392251
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |||    
T  34392129 tgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatataccat 34392227  T
Q  384 tggtaccttaatggtacacaagtg 407  Q
    |||||||| |||||||||||||||    
T  34392228 tggtacctcaatggtacacaagtg 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 389
Target Start/End: Complemental strand, 10163615 - 10163501
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| | |||||||||||| ||    
T  10163615 attaaggtatgccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcacatttttattggtcaatgtt 10163516  T
Q  375 atataacattggtac 389  Q
    |||||||||||||||    
T  10163515 atataacattggtac 10163501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 405
Target Start/End: Complemental strand, 7381794 - 7381695
Alignment:
Q  306 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 405  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 394
Target Start/End: Original strand, 23863851 - 23863958
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||  |||||  ||||| |||    
T  23863851 tgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactctaattgaccaata--atataccat 23863947  T
Q  384 tggtaccttaa 394  Q
    |||||||||||    
T  23863948 tggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 21604055 - 21603960
Alignment:
Q  312 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||||| | ||||||||||  |||||| |||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtg 21603960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 14565908 - 14566019
Alignment:
Q  291 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 390  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||  ||| |||||  |||||||||||||||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  391 ttaatggtacaca 403  Q
    ||| |||||||||    
T  14566007 ttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 37357988 - 37358091
Alignment:
Q  304 aaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 403  Q
    |||||| | |||| |||||||| |||||||||||||||||| || ||| |||||||| ||| ||||||  |||||| |||||||||||||||| ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T
Q  404 agtg 407  Q
    ||||    
T  37358088 agtg 37358091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 3668048 - 3668112
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 339  Q
    |||||| | ||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  3668048 attaagatgtgccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 4779692 - 4779635
Alignment:
Q  300 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacact 358  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattgttaggcggcacact 4779635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 37811153 - 37811084
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccat 415  Q
    ||||||||||||| | ||||| |||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  37811153 tatgtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtggtgtccat 37811084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 41095834 - 41095914
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 365  Q
    |||||||||||| ||  ||||||||| || |||||||||||| ||||||||||||||||||||| ||||  |||||| ||||    
T  41095834 tgccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtggtgcactctaattg 41095914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 4775758 - 4775635
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggtcaatattatataaca 382  Q
    ||||||||||||||  |||||||||| |||||| |||||||  | ||| |||||||| |||||||  ||  ||| ||| ||||| ||||| |||||| ||    
T  4775758 tgccatgtggcacatcctttaaaaaa-atatattaaataaaacaattaataaagtaagattggtagatgagacattctaattggccaataatatatatca 4775660  T
Q  383 ttggtaccttaatggtacacaagtg 407  Q
    |||||| |||||||||||| |||||    
T  4775659 ttggtagcttaatggtacataagtg 4775635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 411
Target Start/End: Original strand, 3668320 - 3668390
Alignment:
Q  341 attggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgt 411  Q
    |||| |||||| ||||||||||    ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  3668320 attgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaatgatacacaaatgatgt 3668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 25275676 - 25275741
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacac 357  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||    
T  25275676 gtggcacatcctttaaaaaag-tatatcaaataaagtattta-aaagtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 38010652 - 38010790
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  38010652 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgtt 38010751  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  38010752 atataacattggtaccttaatggtacacaagtggtgtcc 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 13478083 - 13478221
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  13478083 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgtt 13478182  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  13478183 atataacattggttccttaatggtacacaagtggtgtcc 13478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 29990095 - 29989957
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29990095 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 29989996  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  29989995 atataacattgataccttaatggtacacaagtggtgtcc 29989957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 13086886 - 13086748
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  13086886 attaaggtgtgacatgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgtt 13086787  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13086786 atataacattggtaccttaatggtacacaagtggtgtcc 13086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 13015502 - 13015382
Alignment:
Q  287 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 386  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13015502 catgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgg 13015403  T
Q  387 taccttaatggtacacaagtg 407  Q
    |||||||||||||||||||||    
T  13015402 taccttaatggtacacaagtg 13015382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 277 - 413
Target Start/End: Original strand, 13421050 - 13421186
Alignment:
Q  277 taaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 376  Q
    |||||| || ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  |||||||||||| ||||| ||||    
T  13421050 taaggtgtgtcatgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttat 13421149  T
Q  377 ataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||| |||||||||||||||||||||||||||    
T  13421150 ataacattgataccttaatggtacacaagtgatgtcc 13421186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 37881263 - 37881185
Alignment:
Q  286 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttatt 364  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37881263 ccatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 408
Target Start/End: Original strand, 33858592 - 33858709
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  ||||||  ||||||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  390 cttaatggtacacaagtga 408  Q
    |||||||||||||| ||||    
T  33858691 cttaatggtacacaggtga 33858709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 407
Target Start/End: Original strand, 11607588 - 11607704
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  390 cttaatggtacacaagtg 407  Q
    |||||||||| |||||||    
T  11607687 cttaatggtatacaagtg 11607704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 407
Target Start/End: Original strand, 19357330 - 19357431
Alignment:
Q  306 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 405  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |||||||||| ||||||||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaag 19357429  T
Q  406 tg 407  Q
    ||    
T  19357430 tg 19357431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 1826382 - 1826260
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    |||||||||||||| ||||||||||| ||||||||||||||| || || ||||||| ||||||| ||| |||||||| ||||  ||||  |||||| |||    
T  1826382 tgccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatataccat 1826284  T
Q  384 tggtaccttaatggtacacaagtg 407  Q
    |||||| |||||||||||||||||    
T  1826283 tggtactttaatggtacacaagtg 1826260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 302 - 407
Target Start/End: Complemental strand, 9827894 - 9827789
Alignment:
Q  302 ttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtaca 401  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||   ||   |||||| |||||||||||||||||||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  402 caagtg 407  Q
    ||||||    
T  9827794 caagtg 9827789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 407
Target Start/End: Original strand, 39570097 - 39570213
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| ||||| |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  390 cttaatggtacacaagtg 407  Q
     |||||| ||||||||||    
T  39570196 tttaatgatacacaagtg 39570213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 388
Target Start/End: Complemental strand, 10293004 - 10292893
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| ||||| ||||||||| |||||||||| ||||  ||||||||  | ||| ||| ||||||| ||| |||||||| ||||||||| |||| ||    
T  10293004 attaaggtgtgccacgtggcacaccctttaaaaaaaatat--caaataaaacacttacaaaataacattagtacgtggcacattcttattggccaatgtt 10292907  T
Q  375 atataacattggta 388  Q
    ||||||||||||||    
T  10292906 atataacattggta 10292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 392
Target Start/End: Complemental strand, 33271721 - 33271630
Alignment:
Q  300 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacctt 392  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||| ||  || |||||||| ||||| ||||  |||||| ||||||||||||    
T  33271721 ctttaaaaaa-atatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggc 353  Q
    |||| |||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 35622878 - 35622811
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  35622878 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 35622939 - 35622990
Alignment:
Q  362 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  35622939 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 47186308 - 47186170
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  47186308 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgtt 47186209  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  47186208 atataacattggtaccttaatggtacacaagtggtgtcc 47186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 275 - 414
Target Start/End: Original strand, 31187108 - 31187247
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31187108 attaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 31187207  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcca 414  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  31187208 atataacattggtaccttaatggtacataagtggtgtcca 31187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 42664806 - 42664667
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  42664806 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgtt 42664707  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcca 414  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  42664706 atataactttggtaccttaatggtacacaagtggtgtcca 42664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 275 - 412
Target Start/End: Original strand, 34029329 - 34029466
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| ||  ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||| ||    
T  34029329 attaaggtgtgatatgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgtt 34029428  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtc 412  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  34029429 atataacattggtaccttaatggtaaacaagtggtgtc 34029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 50934613 - 50934500
Alignment:
Q  295 acacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaa 394  Q
    |||| ||||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||  |||||| ||||||||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  395 tggtacacaagtga 408  Q
    ||||||||||||||    
T  50934513 tggtacacaagtga 50934500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 44380371 - 44380255
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||| || ||| |||||| | ||||||||||| |||||| |||||||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  390 cttaatggtacacaagtg 407  Q
    ||||||||||||||||||    
T  44380272 cttaatggtacacaagtg 44380255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 286 - 407
Target Start/End: Complemental strand, 47426471 - 47426351
Alignment:
Q  286 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 385  Q
    ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| || ||| |||||||| ||||| ||||  ||||||  ||||    
T  47426471 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattg 47426373  T
Q  386 gtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||||||||    
T  47426372 gtaccttaatggtacacaagtg 47426351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 33509803 - 33509679
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||  |||||||||| ||| ||||||||||| || |||||||||| ||||||| |||||||||||| ||||||||||  ||||||  ||    
T  33509803 tgccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatactat 33509705  T
Q  384 tggtaccttaatggtacacaagtgat 409  Q
    | ||||||||||||||||||| ||||    
T  33509704 tagtaccttaatggtacacaaatgat 33509679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 21963073 - 21963134
Alignment:
Q  355 cactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccatc 416  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtgatgtccatc 21963134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 395
Target Start/End: Complemental strand, 37742848 - 37742738
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||| ||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||| |||||| ||||| ||||  ||||  |||||| |||    
T  37742848 tgccacgtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatataccat 37742750  T
Q  384 tggtaccttaat 395  Q
    ||||||||||||    
T  37742749 tggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 6023070 - 6022998
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcaca 356  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  6023070 tgccacgtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggcaca 6022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 35094655 - 35094554
Alignment:
Q  300 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc--ttattggtcaatattatataacattggtaccttaatgg 397  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||| ||||||  |||||| || |||||| |||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatgg 35094557  T
Q  398 tac 400  Q
    |||    
T  35094556 tac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  340 cattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagt 406  Q
    |||| ||| |||||||||||| ||||| ||||  |||||| ||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 39498744 - 39498838
Alignment:
Q  312 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagt 406  Q
    ||||| ||||||| |||||||||| |||||| | || ||| |||||| | ||||  ||||| |||||| ||||||||| ||||||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 10018671 - 10018736
Alignment:
Q  342 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||| |||||||||| ||||||  ||||  |||||||||||||||| |||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtg 10018736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 53440608 - 53440541
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| | |||||||| | |||||||||||||||| |  ||||||||||||||| |||||    
T  53440608 tatgtggcacactttcattggtcagtgttatataacattggtatcccaatggtacacaagtggtgtcc 53440541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 10179868 - 10179933
Alignment:
Q  342 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||| |||||||||||| ||||  ||||  |||||| ||||||||| |||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtg 10179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 17466390 - 17466316
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 365  Q
    |||||| || |||||||||| ||||||||| ||||  |||||||||||||||||| || ||| |||||||| ||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattg 17466316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 42273396 - 42273329
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  42273396 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 42273329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 43689451 - 43689404
Alignment:
Q  360 ttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||||    
T  43689451 ttattggtcaatgttatataacattggtatcacaatggtacacaagtg 43689404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 46489703 - 46489652
Alignment:
Q  362 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  46489703 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Original strand, 46489764 - 46489831
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  46489764 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 10123211 - 10123276
Alignment:
Q  342 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||| |||||||||| ||||||  || |  |||||||||||| ||| |||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtg 10123276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 34955119 - 34955067
Alignment:
Q  362 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcca 414  Q
    ||||| |||| |||||||||||||||| |  ||||||||||||||| ||||||    
T  34955119 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 34955067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 52012911 - 52012773
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||    
T  52012911 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgtt 52012812  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  52012811 atataacattggtaccttaatggtacacaagtggtgtcc 52012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 275 - 407
Target Start/End: Original strand, 9799401 - 9799533
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || |||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||| ||||||||| ||    
T  9799401 attaaggtgtgacatgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgtt 9799500  T
Q  375 atataacattggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||||||||||| |||||||    
T  9799501 atataacattggtaccttaatggtatacaagtg 9799533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 47943292 - 47943152
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtc-aatat 373  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||||| |||||    
T  47943292 attaaggtgtgacatgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttattggtcaaatat 47943193  T
Q  374 tatataacattggtaccttaatggtacacaagtgatgtcca 414  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  47943192 tatataacattggtattttaatggtacacaagtggtgtcca 47943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 33249422 - 33249545
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |||    
T  33249422 tgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatataccat 33249520  T
Q  384 tggtaccttaatggtacacaagtga 408  Q
    | |||||||||||||||||||||||    
T  33249521 ttgtaccttaatggtacacaagtga 33249545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 12473824 - 12473705
Alignment:
Q  287 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 386  Q
    |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| ||||||    
T  12473824 catgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatataccattgg 12473726  T
Q  387 taccttaatggtacacaagtg 407  Q
    ||||||||||||| |||||||    
T  12473725 taccttaatggtatacaagtg 12473705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 12528233 - 12528114
Alignment:
Q  287 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 386  Q
    |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| ||||||    
T  12528233 catgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatataccattgg 12528135  T
Q  387 taccttaatggtacacaagtg 407  Q
    ||||||||||||| |||||||    
T  12528134 taccttaatggtatacaagtg 12528114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 21260917 - 21260803
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |||    
T  21260917 tgccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgatatatatcat 21260819  T
Q  384 tggtaccttaatggta 399  Q
    ||||||||||||||||    
T  21260818 tggtaccttaatggta 21260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 46720023 - 46719953
Alignment:
Q  315 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 385  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacattg 46719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 407
Target Start/End: Original strand, 35869625 - 35869741
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||| ||||||||||||| |||||||| | | ||||||||||  |||||| |||||||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  390 cttaatggtacacaagtg 407  Q
    ||||||||||||||||||    
T  35869724 cttaatggtacacaagtg 35869741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 22343457 - 22343338
Alignment:
Q  287 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 386  Q
    |||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||| ||  || |||||||| ||||||||||  |||||| |||||     
T  22343457 catgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatataccattga 22343359  T
Q  387 taccttaatggtacacaagtg 407  Q
    |||||||||||||||||||||    
T  22343358 taccttaatggtacacaagtg 22343338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 51812030 - 51811915
Alignment:
Q  291 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 390  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| |||||| ||||| ||||| ||||| |||||| | ||| ||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataatatatatctttgatacc 51811932  T
Q  391 ttaatggtacacaagtg 407  Q
    |||||||||||| ||||    
T  51811931 ttaatggtacacgagtg 51811915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 314 - 407
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  314 tatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||| | ||||| ||||  ||||||||||||||||| | ||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 49999662 - 49999758
Alignment:
Q  311 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||  ||||   | |||||||| ||| ||| ||||||||||||||    
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 55590559 - 55590483
Alignment:
Q  331 ataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||| ||| |||||| | |||| |||||  |||||| |||||||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtg 55590483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 34829168 - 34829254
Alignment:
Q  322 aaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtga 408  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| || |  |||||| ||||||||||||||| ||||| ||||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtga 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 46720249 - 46720200
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaa-aaaacatatatcaaataa 323  Q
    |||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  46720249 attaaggtgtgtcatgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 54277631 - 54277700
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccat 415  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  54277631 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtccat 54277700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 28092791 - 28092740
Alignment:
Q  362 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  28092791 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Original strand, 28092852 - 28092919
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  28092852 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  349 gtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaa 404  Q
    ||||||||| || ||||| ||||  ||||||| |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 33174636 - 33174581
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacat 342  Q
    ||||| ||||||||| |||||||||   |||||||||||||  ||||||||||||||||    
T  33174636 tgccacgtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 8809678 - 8809816
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  8809678 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgtt 8809777  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8809778 atataacattggtaccttaatggtacacaagtggtgtcc 8809816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 275 - 407
Target Start/End: Complemental strand, 35998385 - 35998253
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||| |||||||||||||||||||  ||||| ||    
T  35998385 attaagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgtt 35998286  T
Q  375 atataacattggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||||||||||| |||||||    
T  35998285 atataacattggtaccttaatggtatacaagtg 35998253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 29119372 - 29119494
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||||||||| ||||| ||||  |||||| |||    
T  29119372 tgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatataccat 29119470  T
Q  384 tggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||||||||||    
T  29119471 tggtaccttaatggtacacaagtg 29119494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 32676259 - 32676137
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||| ||||| ||||  |||||| |||    
T  32676259 tgccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatataccat 32676161  T
Q  384 tggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||||||||||    
T  32676160 tggtaccttaatggtacacaagtg 32676137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 2569152 - 2569038
Alignment:
Q  291 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 390  Q
    |||||||| ||||||||||  |||||||||||||| |||  ||| |||||||||||| |||||||||||| |||||  |||  |||||| ||||||||||    
T  2569152 tggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtacc 2569055  T
Q  391 ttaatggtacacaagtg 407  Q
    |||||||||||||||||    
T  2569054 ttaatggtacacaagtg 2569038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 18056134 - 18056199
Alignment:
Q  347 atgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtc 412  Q
    |||||||||||| | |||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  18056134 atgtggcacactttcattggtcaatattatataacattggtagtttaatggtacacaagtggtgtc 18056199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 25161402 - 25161310
Alignment:
Q  315 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||||||||  |||||||||||||||||| || |||||||||| | ||||||||||  |||||| |||||  || |||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtg 25161310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 35534535 - 35534413
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || |||||||||||| ||||||||||    ||| |||||||  | ||||||| | ||||| |||||||||||||||| | ||  |||| ||    
T  35534535 attaaggtgtgtcatgtggcacaccctttaaaaaa----tattaaataaaacacttataaattgacattagtatgtggcacactctcagtgtccaatgtt 35534440  T
Q  375 atataacattggtaccttaatggtaca 401  Q
    |||||||||||||| ||||||| ||||    
T  35534439 atataacattggtatcttaatgataca 35534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 6223148 - 6223052
Alignment:
Q  311 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||||||||||| || ||||||| |||||||| ||| || |||||  | |||| |||||  |||||||||||| ||| |||||||||||||||||    
T  6223148 atatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 8462245 - 8462141
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||| | ||||||||||  ||||| |||||||  ||||||||| ||||||||||| |||||||||| | |||| |||||  |||||| |||||||||    
T  8462245 gtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtac 8462147  T
Q  390 cttaat 395  Q
     |||||    
T  8462146 tttaat 8462141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 16679829 - 16679868
Alignment:
Q  368 caatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  16679829 caatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 46435571 - 46435623
Alignment:
Q  355 cactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||||||||||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 46435623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 3688917 - 3688972
Alignment:
Q  316 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaat 371  Q
    |||||||||  ||||||||||||||||||||| || | ||||||| ||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaat 3688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 7214500 - 7214578
Alignment:
Q  326 tatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaa 404  Q
    |||||||||||||| || | || ||| |||||||| ||||  ||||| ||||||  ||| |||||||||||||||||||    
T  7214500 tatttataaagtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaa 7214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 5581326 - 5581281
Alignment:
Q  362 attggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||||    
T  5581326 attggtcaatgttatataacattagtatcctaatggtacacaagtg 5581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 34245700 - 34245562
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  34245700 attaaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgtt 34245601  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||  ||||||||||||||||||||| |||||    
T  34245600 atataacattaataccttaatggtacacaagtggtgtcc 34245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 407
Target Start/End: Complemental strand, 11113684 - 11113557
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| ||||||||||| ||  ||||||||||     ||||||||||| | ||| ||||||||||| ||||||| |||||||||||| |||||| ||    
T  11113684 attaaggtgtgccatgtggcgcatcctttaaaaaa-----atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgtt 11113590  T
Q  375 atataacattggtaccttaatggtacacaagtg 407  Q
    ||||| |||||||||||||||||||||||||||    
T  11113589 atatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 1211892 - 1212015
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||| ||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  |||||| |||    
T  1211892 tgccacgtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatataccat 1211990  T
Q  384 tggtaccttaatggtacacaagtga 408  Q
    |||||||||||||||||||||||||    
T  1211991 tggtaccttaatggtacacaagtga 1212015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 5403940 - 5404046
Alignment:
Q  300 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggta 399  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||| |||||| ||||| | ||  ||||| |||||| |||| ||||||||||||||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  400 cacaagtg 407  Q
    ||||||||    
T  5404039 cacaagtg 5404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 32644888 - 32645002
Alignment:
Q  287 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 386  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||| |||||  | ||||| ||||  ||||||  || |     
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcga 32644985  T
Q  387 taccttaatggtacaca 403  Q
    || ||||||||||||||    
T  32644986 tatcttaatggtacaca 32645002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 11753232 - 11753168
Alignment:
Q  343 tggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||| |||| ||||||| ||||| | ||  |||||| |||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtg 11753168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 31030154 - 31030087
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| |  || ||||| |||||| |||||    
T  31030154 tatgtggcacactgttattgaccaatattatataacattggtatcccaacggtacgcaagtggtgtcc 31030087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 1514936 - 1514798
Alignment:
Q  275 attaaggtttgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 374  Q
    |||||||| || ||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||| ||    
T  1514936 attaaggtgtgacatatggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgtt 1514837  T
Q  375 atataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  1514836 atataacattggtaccttaatggtacacaagtggtgtcc 1514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 18168503 - 18168392
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  390 cttaatggtaca 401  Q
    ||||||||||||    
T  18168403 cttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 18632060 - 18631949
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  390 cttaatggtaca 401  Q
    ||||||||||||    
T  18631960 cttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 41179611 - 41179733
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||||||||||||  | |||||||| |||||| |||||||  |||||||||||||||| |||| ||| |||||| | ||||| ||||  |||||| |||    
T  41179611 tgccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatcat 41179709  T
Q  384 tggtaccttaatggtacacaagtg 407  Q
    ||||||||||||||||||||||||    
T  41179710 tggtaccttaatggtacacaagtg 41179733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 24337882 - 24338000
Alignment:
Q  288 atgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggt 387  Q
    ||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||  ||||||||||| ||||  | ||  |||||| ||||| |    
T  24337882 atgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatataccattgct 24337980  T
Q  388 accttaatggtacacaagtg 407  Q
    |||||||| |||||||||||    
T  24337981 accttaatagtacacaagtg 24338000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 407
Target Start/End: Original strand, 11254082 - 11254197
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11254179  T
Q  390 cttaatggtacacaagtg 407  Q
     |||||||||||||||||    
T  11254180 tttaatggtacacaagtg 11254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 4708355 - 4708470
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||| ||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||| | |||||   ||  |||||  |||    
T  4708355 tgccacgtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgatatatgccat 4708453  T
Q  384 tggtaccttaatggtac 400  Q
    |||||||||| ||||||    
T  4708454 tggtaccttagtggtac 4708470  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 32825904 - 32826006
Alignment:
Q  306 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 405  Q
    |||| ||||||||||||||  |  |||||| |||||||| |||||| || ||||| ||||| ||||  |||| ||||||| ||| |||||||||||||||    
T  32825904 aaaaaatatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggtatacaacattgatactttaatggtacacaag 32826003  T
Q  406 tga 408  Q
    |||    
T  32826004 tga 32826006  T

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Target: scaffold0032 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 34306 - 34195
Alignment:
Q  294 cacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacctta 393  Q
    ||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||    
T  34306 cacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtacctta 34209  T
Q  394 atggtacacaagtg 407  Q
    ||||||||||||||    
T  34208 atggtacacaagtg 34195  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 35341653 - 35341537
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  35341653 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtac 35341555  T
Q  390 cttaatggtacacaagtg 407  Q
    ||||||||||||||||||    
T  35341554 cttaatggtacacaagtg 35341537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 48250274 - 48250155
Alignment:
Q  287 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 386  Q
    ||||| ||| || |||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||| ||||  ||||  |||||| ||||||    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  387 taccttaatggtacacaagtg 407  Q
    |||||||||||||||||||||    
T  48250175 taccttaatggtacacaagtg 48250155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 48072510 - 48072390
Alignment:
Q  284 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacat 383  Q
    ||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||||||||  |||||||||||||| |||| |||||  ||||  |  |    
T  48072510 tgccacgtggcacaccctttaaaaaa-atacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatggtatacta--t 48072414  T
Q  384 tggtaccttaatggtacacaagtg 407  Q
    |||||||||||| |||||||||||    
T  48072413 tggtaccttaatagtacacaagtg 48072390  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  315 atcaaataaagtatttataaagtaacattggtatgtggcacactct-tattggtcaatattatataacattggtaccttaatggtacacaa 404  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| |  ||||| ||||  |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 32694624 - 32694677
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattg 344  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 13053 - 13177
Alignment:
Q  284 tgccatgtggcaca-cactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataaca 382  Q
    ||||| |||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  |||||| ||    
T  13053 tgccacgtggcacaaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatacca 13151  T
Q  383 ttggtaccttaatggtacacaagtga 408  Q
    ||||||||||||||||||||||||||    
T  13152 ttggtaccttaatggtacacaagtga 13177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 407
Target Start/End: Original strand, 23168 - 23263
Alignment:
Q  306 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 405  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||  ||||      | ||||||||||||||||||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaag 23261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 23139 - 23094
Alignment:
Q  362 attggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||| ||||| |||||| |||||||||||||||| ||||||||||    
T  23139 attggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 11311 - 11196
Alignment:
Q  290 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 389  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11214  T
Q  390 cttaatggtacacaagtg 407  Q
     |||||||||||||||||    
T  11213 tttaatggtacacaagtg 11196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 6486 - 6425
Alignment:
Q  346 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 407  Q
    ||||||||||||  ||||||| |||| ||||||||||||| || |  |||||||||||||||    
T  6486 tatgtggcacacctttattggccaatgttatataacattgatatcccaatggtacacaagtg 6425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 28119 - 28164
Alignment:
Q  368 caatattatataacattggtaccttaatggtacacaagtgatgtcc 413  Q
    |||||||||||||||| |||| || ||||||||||||||| |||||    
T  28119 caatattatataacatcggtatctcaatggtacacaagtggtgtcc 28164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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