View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_236 (Length: 235)
Name: NF6865A_low_236
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_236 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 49956499 - 49956304
Alignment:
| Q |
24 |
aacagagaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaa |
123 |
Q |
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| T |
49956499 |
aacagagaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaa |
49956400 |
T |
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| Q |
124 |
gttttgaaagaataaaacaacaaatgtggggttaagtgtatccggctccaagttagattgcaaaaaccctaatgatagatactgatagcaaccttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49956399 |
gttttgaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaaccttt |
49956304 |
T |
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