View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_238 (Length: 234)
Name: NF6865A_low_238
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_238 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4119795 - 4119639
Alignment:
| Q |
1 |
aggaatctgaattcgctgaccaccgtatcggaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaacgccttttcctcgttcgcctgtgatg |
100 |
Q |
| |
|
||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4119795 |
aggaaactgaattccctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgccttttcctcgttcgcctgtgatg |
4119696 |
T |
|
| Q |
101 |
tttcatatatatctcttgataagaattaattcaataaaaaa--tatatgaagttttatt |
157 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
4119695 |
tttcat--atatctcttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 4119408 - 4119340
Alignment:
| Q |
156 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaagttcatc |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcatc |
4119340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University