View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_241 (Length: 232)

Name: NF6865A_low_241
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_241
NF6865A_low_241
[»] chr4 (5 HSPs)
chr4 (4-227)||(24666621-24666844)
chr4 (4-227)||(34941558-34941782)
chr4 (4-227)||(18363426-18363645)
chr4 (4-227)||(36599283-36599502)
chr4 (105-180)||(8752390-8752465)
[»] chr1 (2 HSPs)
chr1 (108-227)||(26240615-26240735)
chr1 (4-88)||(26240779-26240863)
[»] chr3 (2 HSPs)
chr3 (4-180)||(53242722-53242900)
chr3 (52-203)||(43479315-43479456)
[»] chr2 (2 HSPs)
chr2 (4-167)||(19697413-19697568)
chr2 (4-58)||(13265597-13265651)
[»] chr8 (1 HSPs)
chr8 (13-117)||(32566462-32566563)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 24666844 - 24666621
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 103  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  24666844 ataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat 24666745  T
Q  104 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 203  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24666744 ctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 24666645  T
Q  204 accaatttcttggtgttgataact 227  Q
    ||||||||||||||||||||||||    
T  24666644 accaatttcttggtgttgataact 24666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 34941558 - 34941782
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 103  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| |||||||||||||||  |||||||||||| |||||| |||||||    
T  34941558 ataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatctcttcat 34941657  T
Q  104 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 203  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34941658 cctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaatgacagga 34941757  T
Q  204 a-ccaatttcttggtgttgataact 227  Q
    | |||||||||||||||||||||||    
T  34941758 acccaatttcttggtgttgataact 34941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 18363645 - 18363426
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 103  Q
    ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||||||||||    
T  18363645 ataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttcttcat 18363546  T
Q  104 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 203  Q
    ||||  ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18363545 cctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacatga 18363450  T
Q  204 accaatttcttggtgttgataact 227  Q
    ||||||||||||||||||||||||    
T  18363449 accaatttcttggtgttgataact 18363426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 36599283 - 36599502
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 103  Q
    ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||||||||||    
T  36599283 ataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttcttcat 36599382  T
Q  104 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga 203  Q
    ||||  ||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36599383 cctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacatga 36599478  T
Q  204 accaatttcttggtgttgataact 227  Q
    ||||||||||||||||||||||||    
T  36599479 accaatttcttggtgttgataact 36599502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
Q  105 cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 180  Q
    ||||||||||||||||||||  || |||| | | | ||||||| ||||||||||||||| ||| ||||||||||||    
T  8752390 cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa 8752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
Q  108 ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc 206  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  26240735 ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc 26240636  T
Q  207 aatttcttggtgttgataact 227  Q
    |||||||||||||||||||||    
T  26240635 aatttcttggtgttgataact 26240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 26240863 - 26240779
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct 88  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||||    
T  26240863 ataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct 26240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 53242722 - 53242900
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattatatttcttc 101  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || |  ||| |||| ||||||||||||| |||    
T  53242722 ataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattatatttgttc 53242821  T
Q  102 atccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa 180  Q
    ||||| ||||||||   | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | ||||||||||    
T  53242822 atcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa 53242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
Q  52 agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaa 151  Q
    ||||||| |||||||||| ||||  ||| |||| ||||||||||||||||||| | |||||||| |           |||||||||||||||||||||||    
T  43479456 agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaa 43479368  T
Q  152 aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga 203  Q
    |||||||||||||||| | ||||||||||| |||| | || ||||||| ||||    
T  43479367 aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga 43479315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 19697413 - 19697568
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat 103  Q
    |||| ||||||||||||||||| || |||||| || |||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  19697413 atactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat 19697511  T
Q  104 ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt 167  Q
    | ||||||||||| || |       |||| |||||||||||||| |||||||||||||||||||    
T  19697512 cattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt 19697568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 13265597 - 13265651
Alignment:
Q  4 ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat 58  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  13265597 ataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat 13265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
Q  13 gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa 112  Q
    |||||| ||||||||  ||||||||| ||||  ||||||||||||| || ||||||| ||||  |||||||||||||||||||||| ||||| | |||||    
T  32566563 gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa 32566467  T
Q  113 ctcct 117  Q
    |||||    
T  32566466 ctcct 32566462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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