View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_244 (Length: 231)

Name: NF6865A_low_244
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_244
NF6865A_low_244
[»] chr2 (15 HSPs)
chr2 (1-231)||(32786521-32786751)
chr2 (1-231)||(32306391-32306621)
chr2 (1-219)||(32310533-32310751)
chr2 (1-219)||(32813732-32813950)
chr2 (1-219)||(32564069-32564287)
chr2 (1-217)||(28221983-28222199)
chr2 (1-217)||(28214085-28214301)
chr2 (1-109)||(32792904-32793012)
chr2 (13-215)||(28177383-28177590)
chr2 (1-124)||(28158816-28158939)
chr2 (1-67)||(32799572-32799638)
chr2 (151-215)||(28158724-28158788)
chr2 (151-215)||(28169293-28169357)
chr2 (177-215)||(28183168-28183206)
chr2 (151-215)||(32317504-32317567)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32786521 - 32786751
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786521 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 32786620  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786621 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 32786720  T
Q  201 gtatgacatccctttgtcactactagagtga 231  Q
    |||||||||||||||||||||||||||||||    
T  32786721 gtatgacatccctttgtcactactagagtga 32786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 32306621 - 32306391
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32306621 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 32306522  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32306521 gttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaatgcttgcat 32306422  T
Q  201 gtatgacatccctttgtcactactagagtga 231  Q
    |||||||||||||||||||||||||||||||    
T  32306421 gtatgacatccctttgtcactactagagtga 32306391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32310751 - 32310533
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310751 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 32310652  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310651 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 32310552  T
Q  201 gtatgacatccctttgtca 219  Q
    |||||||||||||||||||    
T  32310551 gtatgacatccctttgtca 32310533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32813732 - 32813950
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32813732 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatctggcagtcttctcttgagccatcagct 32813831  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32813832 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggtactgcagatgacaatgcttgcat 32813931  T
Q  201 gtatgacatccctttgtca 219  Q
    |||||||||||||||||||    
T  32813932 gtatgacatccctttgtca 32813950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32564069 - 32564287
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32564069 aatttcaacataacccttgcgaaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 32564168  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  32564169 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcat 32564268  T
Q  201 gtatgacatccctttgtca 219  Q
    |||||||||||||||||||    
T  32564269 gtatgacatccctttgtca 32564287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28222199 - 28221983
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  28222199 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatatggcagtcttctcttaagccatcagct 28222100  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  28222099 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgctt 28222000  T
Q  201 gtatgacatccctttgt 217  Q
    |||||||||||||||||    
T  28221999 gtatgacatccctttgt 28221983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 28214085 - 28214301
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  28214085 aatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagct 28214184  T
Q  101 gttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  28214185 gttgatcagcaaacaataaccctcttcctctcaacaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgctt 28214284  T
Q  201 gtatgacatccctttgt 217  Q
    |||||||||||||||||    
T  28214285 gtatgacatccctttgt 28214301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32792904 - 32793012
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32792904 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 32793003  T
Q  101 gttgatcag 109  Q
    |||||||||    
T  32793004 gttgatcag 32793012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 28177590 - 28177383
Alignment:
Q  13 acccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaa 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| || ||| |  |||||  ||||||||||||||||| ||| |    
T  28177590 acccttgcaaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaacctagcactgctctctccagccatcagctgttgattagcga 28177491  T
Q  113 acaata-----accctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgac 207  Q
    ||| ||      |||||||||||| || |||||| ||||  |   ||||||||| ||||||  ||||| ||||||||||||||| |||||||||  ||||    
T  28177490 acagtagccctcccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgac 28177391  T
Q  208 atcccttt 215  Q
    ||| ||||    
T  28177390 atcacttt 28177383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 28158939 - 28158816
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagct 100  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||| ||||||  |||||| ||||    
T  28158939 aatttcaacaccacccttgccaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatctagcagtgttctctccagccatgagct 28158840  T
Q  101 gttgatcagcaaacaataaccctc 124  Q
    |||||| ||| |||| || |||||    
T  28158839 gttgattagcgaacagtagccctc 28158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32799572 - 32799638
Alignment:
Q  1 aatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32799572 aatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 32799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 28158788 - 28158724
Alignment:
Q  151 tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt 215  Q
    ||||||||||| |||||| |||||| ||||||||| |||||  |||||||| |||||||| ||||    
T  28158788 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt 28158724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 28169357 - 28169293
Alignment:
Q  151 tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt 215  Q
    ||||||||||| |||||| |||||| ||||||||| |||||  |||||||| |||||||| ||||    
T  28169357 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt 28169293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 28183206 - 28183168
Alignment:
Q  177 cactgcagatgacaatgcttgcatgtatgacatcccttt 215  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  28183206 cactgcagatgacaacgcttccatgtatgacatcccttt 28183168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 32317567 - 32317504
Alignment:
Q  151 tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt 215  Q
    |||||||||||||||| |  ||||||||||||| ||||||| ||||||  |||||| ||||||||    
T  32317567 tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatcccttt 32317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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