View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_245 (Length: 231)

Name: NF6865A_low_245
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_245
NF6865A_low_245
[»] chr3 (3 HSPs)
chr3 (16-219)||(3237646-3237849)
chr3 (85-130)||(8969257-8969302)
chr3 (48-128)||(41469685-41469765)
[»] chr7 (2 HSPs)
chr7 (16-219)||(16331895-16332098)
chr7 (24-109)||(32059573-32059658)
[»] chr6 (2 HSPs)
chr6 (16-214)||(33098222-33098420)
chr6 (54-129)||(10515308-10515383)
[»] chr1 (1 HSPs)
chr1 (85-131)||(31882006-31882052)
[»] scaffold1689 (1 HSPs)
scaffold1689 (71-129)||(65-123)
[»] chr2 (1 HSPs)
chr2 (85-129)||(21085868-21085912)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 3237849 - 3237646
Alignment:
Q  16 acatcacacctctacggtttagtcttacatgcgtaggtaaacattccctacacactctccaaaccatactcttaactttcggaggcactttcaatttcca 115  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3237849 acataacacctctacggtttagtcttacacgcgtaggtaaacattccctacacactctccaaaccatactcttaactttctgaggcactttcaatttcca 3237750  T
Q  116 tatgccactccaatgatcattcttcctaaaatgagaattatccactatgtcttccatacacaaacgctacacgcttcttaccaaatattgtccgttcttc 215  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  3237749 tatgccactccaatgaccattcttcctaagatgagaattatccactatgtcttccatacacaaacgctacacgcttcttactgaatattgtccgttcttc 3237650  T
Q  216 tcag 219  Q
    ||||    
T  3237649 tcag 3237646  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 8969257 - 8969302
Alignment:
Q  85 tcttaactttcggaggcactttcaatttccatatgccactccaatg 130  Q
    |||||||||| |||||||||||||||  ||| ||||||||||||||    
T  8969257 tcttaactttaggaggcactttcaatcgccaaatgccactccaatg 8969302  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 41469765 - 41469685
Alignment:
Q  48 gtaggtaaacattccctacacactctccaaaccatactcttaactttcggaggcactttcaatttccatatgccactccaa 128  Q
    |||||||||||||| |||||||||| ||| | |||| ||||||| || || || ||||| |||||||| || |||| ||||    
T  41469765 gtaggtaaacattctctacacactcgccacaacatattcttaaccttaggtggaacttttaatttccaaattccaccccaa 41469685  T

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Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 16332098 - 16331895
Alignment:
Q  16 acatcacacctctacggtttagtcttacatgcgtaggtaaacattccctacacactctccaaaccatactcttaactttcggaggcactttcaatttcca 115  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||    
T  16332098 acataacacctctacggtttagtattacacgcgtaggtaaacattccctacgcactctccaaacactactcttaactttcagaggcactttcaatttcca 16331999  T
Q  116 tatgccactccaatgatcattcttcctaaaatgagaattatccactatgtcttccatacacaaacgctacacgcttcttaccaaatattgtccgttcttc 215  Q
     ||||||||||||||| |||| ||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  16331998 catgccactccaatgaccattattcctaagatgagaattatccattttgtcttccatacacaaacggtacgcgcttcttaccaaatattgtctgttcttc 16331899  T
Q  216 tcag 219  Q
    ||||    
T  16331898 tcag 16331895  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 32059658 - 32059573
Alignment:
Q  24 cctctacggtttagtcttacatgcgtaggtaaacattccctacacactctccaaaccatactcttaactttcggaggcactttcaa 109  Q
    ||||||| ||| | ||||||| | ||||| ||||||| ||||||||||| ||| |||||| |||||||||| || || ||||||||    
T  32059658 cctctacagttcaatcttacacgagtaggcaaacatttcctacacactcgccacaccatattcttaacttttgggggaactttcaa 32059573  T

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Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 33098420 - 33098222
Alignment:
Q  16 acatcacacctctacggtttagtcttacatgcgtaggtaaacattccctacacactctccaaaccatactcttaactttcggaggcactttcaatttcca 115  Q
    |||| ||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  33098420 acataacacctctacgatttagtcttgcacgtgtaggtaaacattccctacacactctccaaaccatgctcttaactttcggaggcactttcaatctcca 33098321  T
Q  116 tatgccactccaatgatcattcttcctaaaatgagaattatccactatgtcttccatacacaaacgctacacgcttcttaccaaatattgtccgttctt 214  Q
     ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  ||| | ||||||||| ||||||||||||||||    
T  33098320 catgccactccaatgaccattcttcctaagatgagaattatccactatgtcttcaatacacaaacagtacgcacttcttaccgaatattgtccgttctt 33098222  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 10515383 - 10515308
Alignment:
Q  54 aaacattccctacacactctccaaaccatactcttaactttcggaggcactttcaatttccatatgccactccaat 129  Q
    ||||| || ||||| | |||||| |||| | |||| ||||| ||||||||||||||| ||||||| ||||||||||    
T  10515383 aaacagtctctacaaattctccacaccaaattcttgactttgggaggcactttcaatctccatataccactccaat 10515308  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 31882052 - 31882006
Alignment:
Q  85 tcttaactttcggaggcactttcaatttccatatgccactccaatga 131  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  31882052 tcttaacttttggaggtactttcaatttctatatgccactccaatga 31882006  T

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Target: scaffold1689 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 123 - 65
Alignment:
Q  71 tctccaaaccatactcttaactttcggaggcactttcaatttccatatgccactccaat 129  Q
    ||||||||| | | |||||||||| || |||||||||||| |||||||||| |||||||    
T  123 tctccaaactaaattcttaactttagggggcactttcaatctccatatgccgctccaat 65  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 21085868 - 21085912
Alignment:
Q  85 tcttaactttcggaggcactttcaatttccatatgccactccaat 129  Q
    |||| ||||| |||||||||||||||||||| || ||||||||||    
T  21085868 tcttgactttaggaggcactttcaatttccagataccactccaat 21085912  T

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