View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_248 (Length: 230)
Name: NF6865A_low_248
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_248 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 47565856 - 47565627
Alignment:
| Q |
1 |
tcaaaatatccggtgtcaagactgcttcagatactgcagacaaactacagatgagaagggcatttagaattgaggcagttggactgatgagcttgtggtt |
100 |
Q |
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| T |
47565856 |
tcaaaatatccggtgtcaagactgcttcagatactgctgacaaactacagatgagaagggcatttagaattgaggcagttggactgatgagcttgtggtt |
47565757 |
T |
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| Q |
101 |
tagctttggttcaggtgttcttgctcgttttgttgttgagtgggaatccggtaaagagggttgcacaatgcatgtatctcctgatcaactttggcctcat |
200 |
Q |
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| T |
47565756 |
tagctttggttcaggtgttcttgctcgttttgttgttgagtgggaatccggtaaagagggttgcacaatgcatgtatctcctgatcaactttggcctcat |
47565657 |
T |
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| Q |
201 |
accaaggtttgttaattttgcttcaactga |
230 |
Q |
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| T |
47565656 |
accaaggtttgttaattttgcttcaactga |
47565627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38973480 - 38973253
Alignment:
| Q |
1 |
tcaaaatatccggtgtcaagactgcttcagatactgcagacaaactacagatgagaagggcatttagaattgaggcagttggactgatgagcttgtggtt |
100 |
Q |
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|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38973480 |
tcaaaatatctggtgtcaagaccgcttcagattctgcagacaaactacagatgagaagggcatttagaattgaggcagttggactgatgagcttgtggtt |
38973381 |
T |
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| Q |
101 |
tagctttggttcaggtgttcttgctcgttttgttgttgagtgggaatccggtaaagagggttgcacaatgcatgtatctcctgatcaactttggcctcat |
200 |
Q |
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| T |
38973380 |
tagctttagttcaggtgtccttgctcgttttgttgttgagtgggaatccagtaaagagggttgcacaatgcatgtatctcctgatcaactttggcctcat |
38973281 |
T |
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| Q |
201 |
accaaggtttgttaattttgcttcaact |
228 |
Q |
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| T |
38973280 |
accaaggtttgttaattttgcttcaact |
38973253 |
T |
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