View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_255 (Length: 230)
Name: NF6865A_low_255
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_255 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 31745331 - 31745102
Alignment:
| Q |
1 |
tttacaattaccatttttagtattttttaataaattattgaatctcattctcttactataaaatactccctccgatcctttttataaaaagacatttaaa |
100 |
Q |
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| T |
31745331 |
tttacaattaccatttttagtattttttaataaattattgaatcttattctcttactataaaatactccatccggtcctttttataaaaagacatttaaa |
31745232 |
T |
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| Q |
101 |
tcaacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtctatta |
200 |
Q |
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| T |
31745231 |
tcaataaaagttgatgtatctagttaaataattggaccagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtatatta |
31745132 |
T |
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| Q |
201 |
ttttggtaattggtatagactcttttttga |
230 |
Q |
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| T |
31745131 |
ttttggtaattggtatagactcttttttga |
31745102 |
T |
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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 10069229 - 10069312
Alignment:
| Q |
87 |
aaaagacatttaaatcaacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatattt |
170 |
Q |
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| T |
10069229 |
aaaagacatttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaaatattt |
10069312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 32045211 - 32045160
Alignment:
| Q |
64 |
tactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatg |
116 |
Q |
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| T |
32045211 |
tactccctccgatcctatttataaaa-gatatttaactcaacaaaagttaatg |
32045160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 9213512 - 9213572
Alignment:
| Q |
60 |
aaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatgaatct |
121 |
Q |
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| T |
9213512 |
aaaatactccctccggtcctatttat-aaaagacattttagtcaacaaaagttgatgtatct |
9213572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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