View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_265 (Length: 230)
Name: NF6865A_low_265
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_265 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46153580 - 46153350
Alignment:
| Q |
1 |
ttaaatttgcaatgttccccggtgattttgttggttttatagcatttttt--ccgagatgtcataatctttttaaaattggtggacaggtacctcgtaag |
98 |
Q |
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| T |
46153580 |
ttaaatttgcaatgttccccggtgattttgttggttttatagcattttttttccgagatgtcataatctttttaaaattggtggacaggtacctggtaag |
46153481 |
T |
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| Q |
99 |
tcaagggggcattaagcccttgtgtgatctactgacatgtcctgatcctaggattgtgacagtttgtcttgaagggcttgaaaacatcttaaaggtaggg |
198 |
Q |
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| T |
46153480 |
tcaagggtgcattaagcccttgtgtgatctactcacatgtcctgatcctaggattgtgacagtttgtcttgaagggcttgaaaacatcttaaaggtaggg |
46153381 |
T |
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| Q |
199 |
gaagctgataaaaatgccggcatcactgatg |
229 |
Q |
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| T |
46153380 |
gaagctgataaaaatgccggcatcactgatg |
46153350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 37308888 - 37308752
Alignment:
| Q |
77 |
tggtggacaggtacctcgtaagtcaagggggcattaagcccttgtgtgatctactgacatgtcctgatcctaggattgtgacagtttgtcttgaagggct |
176 |
Q |
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| T |
37308888 |
tggttgacaggtacctagtaagtcaagggtgtattaagcccttgtgtgatcttcttatctgtcccgatcctaggattgtgacagtttgtctggaaggcct |
37308789 |
T |
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| Q |
177 |
tgaaaacatcttaaaggtaggggaagctgataaaaat |
213 |
Q |
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| T |
37308788 |
tgaaaacatcttgaaggttggagaagcggataaaaat |
37308752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 22510902 - 22510790
Alignment:
| Q |
82 |
gacaggtacctcgtaagtcaagggggcattaagcccttgtgtgatctactgacatgtcctgatcctaggattgtgacagtttgtcttgaagggcttgaaa |
181 |
Q |
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||||||| ||| |||||||||||| | |||||||||||||||| || || ||| ||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
22510902 |
gacaggttccttgtaagtcaagggtgtgttaagcccttgtgtgagcttctcgtctgttctgatcctacgattgtgacagtttgtctggaaggccttgaaa |
22510803 |
T |
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| Q |
182 |
acatcttaaaggt |
194 |
Q |
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||||||| ||||| |
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| T |
22510802 |
acatcttgaaggt |
22510790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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