View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_266 (Length: 230)
Name: NF6865A_low_266
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_266 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1482799 - 1482586
Alignment:
| Q |
1 |
taaaatgtatacagctttaatcttcaagcagaagattaagcagattggaaaaatcaccaagttctttgcttttggaaccctataaatcatcagaagatga |
100 |
Q |
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| T |
1482799 |
taaaatgtatacagctttaatcttcaagcagaagattaagcagattggaaaaatcaccaagttctttgcttttggatccctataaatcatcagaagatga |
1482700 |
T |
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| Q |
101 |
ttaagctcagcccaaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcacttcaaatcttcttcaattcacctc |
200 |
Q |
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| T |
1482699 |
ttaagctcagcccaaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcacttcaaatctttttcaattcacctc |
1482600 |
T |
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| Q |
201 |
atggacattagggt |
214 |
Q |
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|||||||||||||| |
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| T |
1482599 |
atggacattagggt |
1482586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36717532 - 36717298
Alignment:
| Q |
1 |
taaaatgtatacagctttaatcttcaagcagaagattaagcagattggaaaaatcaccaagttctttgcttt------tggaaccctataaatcatcaga |
94 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||| || | |||| || ||||||||||| |||||| || | ||||||||||||||||| |
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| T |
36717532 |
taaaatgtatacagctataatcttcaagtagaagattacacaaactggatcaaacaccaagttctctgctttccttcttgaagccctataaatcatcaga |
36717433 |
T |
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| Q |
95 |
agatgattaagctcagcccaaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcacttcaaatcttcttcaatt |
194 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||| | |||| ||| |||| |||||||| ||||||||||||||| |
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| T |
36717432 |
agatgattaagctcagcccaaatctcctttcccatttgctctaagatttctccttcaattctctttaat-tttttcctgcactttaaatcttcttcaatt |
36717334 |
T |
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| Q |
195 |
cacctcatggacattagggtcgaaacccttttctga |
230 |
Q |
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|||||||||||||| | |||| ||||||||||||| |
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| T |
36717333 |
cacctcatggacatcaaggtcctaacccttttctga |
36717298 |
T |
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