View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_27 (Length: 417)
Name: NF6865A_low_27
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_27 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 9805054 - 9804675
Alignment:
| Q |
1 |
gataataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaa |
100 |
Q |
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| T |
9805054 |
gataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaa |
9804955 |
T |
|
| Q |
101 |
tgatcaagatnnnnnnntatatgaaaaaagtttggattacattttttgaccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
200 |
Q |
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||||| |||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9804954 |
tgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagat |
9804856 |
T |
|
| Q |
201 |
aaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804855 |
aaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgc |
9804756 |
T |
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| Q |
301 |
taggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga |
381 |
Q |
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| T |
9804755 |
ttggagagaggttggcaacagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 9817979 - 9817777
Alignment:
| Q |
1 |
gataataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaa |
100 |
Q |
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| T |
9817979 |
gataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagagaaagacatgcaaaa |
9817880 |
T |
|
| Q |
101 |
tgatcaagatnnnnnnntatatgaaaaaagtttggattacattttttgaccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
200 |
Q |
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||||| |||| || || ||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
9817879 |
tgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagat |
9817782 |
T |
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| Q |
201 |
aacca |
205 |
Q |
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||||| |
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| T |
9817781 |
aacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 266 - 409
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
| Q |
266 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
365 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
|
| Q |
366 |
aatgaggatgggaggattattttgtttgattgatgtccatctca |
409 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattgatgtcgatctca |
9817550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
| Q |
263 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
362 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
|
| Q |
363 |
agaaatgaggatgggaggattattttgtttgattgatgtc |
402 |
Q |
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|||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgatcgatgtc |
9817438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
273 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
372 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
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| Q |
373 |
atgggagga |
381 |
Q |
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||||||||| |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 9806742 - 9806792
Alignment:
| Q |
4 |
aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa |
54 |
Q |
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| T |
9806742 |
aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa |
9806792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 11987 - 11788
Alignment:
| Q |
2 |
ataataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat |
101 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
11987 |
ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat |
11888 |
T |
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| Q |
102 |
gatcaagatnnnnnnntatatg-aaaaaagtttggattacattttttgaccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
200 |
Q |
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|| |||| || || ||||||||| |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887 |
tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
11790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 259 - 409
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
| Q |
259 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
358 |
Q |
| |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
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| Q |
359 |
aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca |
409 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca |
11558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 381
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
263 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
362 |
Q |
| |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
363 |
agaaatgaggatgggagga |
381 |
Q |
| |
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||||||||||||||||||| |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
51 |
gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattacattttttgac |
150 |
Q |
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||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || ||||||||||||||||||| ||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
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| Q |
151 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
205 |
Q |
| |
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||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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