View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_272 (Length: 229)

Name: NF6865A_low_272
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_272
NF6865A_low_272
[»] chr7 (13 HSPs)
chr7 (78-166)||(23925608-23925697)
chr7 (4-69)||(23925498-23925563)
chr7 (156-229)||(23925728-23925801)
chr7 (84-151)||(22939049-22939117)
chr7 (78-166)||(24501516-24501605)
chr7 (156-228)||(27289026-27289098)
chr7 (156-228)||(22938931-22939003)
chr7 (156-227)||(24501636-24501707)
chr7 (156-202)||(11506291-11506337)
chr7 (178-227)||(21740320-21740369)
chr7 (104-151)||(21739198-21739246)
chr7 (84-151)||(27288912-27288980)
chr7 (156-215)||(11513014-11513073)
[»] chr2 (5 HSPs)
chr2 (157-228)||(22197989-22198060)
chr2 (77-151)||(12630023-12630098)
chr2 (156-227)||(33737023-33737094)
chr2 (77-166)||(33736902-33736992)
chr2 (156-227)||(12630143-12630214)
[»] scaffold0548 (1 HSPs)
scaffold0548 (139-229)||(9882-9972)
[»] scaffold0089 (2 HSPs)
scaffold0089 (77-166)||(32953-33043)
scaffold0089 (156-227)||(32851-32922)
[»] chr3 (7 HSPs)
chr3 (77-166)||(13371764-13371854)
chr3 (139-229)||(15103032-15103122)
chr3 (156-224)||(13371885-13371953)
chr3 (142-225)||(52613095-52613178)
chr3 (116-221)||(15097250-15097357)
chr3 (157-227)||(20129516-20129586)
chr3 (164-229)||(19911203-19911268)
[»] chr6 (5 HSPs)
chr6 (156-227)||(20511908-20511979)
chr6 (77-166)||(22474354-22474443)
chr6 (78-166)||(16729555-16729644)
chr6 (156-227)||(16729675-16729746)
chr6 (156-227)||(22474474-22474545)
[»] chr5 (12 HSPs)
chr5 (77-166)||(20027840-20027930)
chr5 (166-227)||(8376141-8376202)
chr5 (156-229)||(17943171-17943244)
chr5 (156-229)||(32664447-32664520)
chr5 (156-227)||(17009874-17009945)
chr5 (91-151)||(17943064-17943125)
chr5 (78-166)||(17009754-17009843)
chr5 (161-228)||(8376205-8376273)
chr5 (77-166)||(14481868-14481958)
chr5 (94-151)||(32664566-32664624)
chr5 (155-227)||(20027737-20027810)
chr5 (177-229)||(36517015-36517067)
[»] chr4 (5 HSPs)
chr4 (78-166)||(49946990-49947079)
chr4 (104-229)||(37941505-37941631)
chr4 (176-228)||(45837727-45837779)
chr4 (156-227)||(49947110-49947181)
chr4 (176-228)||(3311976-3312028)
[»] chr1 (4 HSPs)
chr1 (79-147)||(17176233-17176302)
chr1 (157-229)||(17176110-17176182)
chr1 (142-229)||(36478773-36478860)
chr1 (91-166)||(36478877-36478954)
[»] chr8 (3 HSPs)
chr8 (157-229)||(6813919-6813991)
chr8 (77-166)||(25043086-25043176)
chr8 (84-166)||(16232380-16232463)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 23925608 - 23925697
Alignment:
Q  78 tttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  23925608 ttttttaattttcataaagcacaaacatagcgtttgtgaaaagcgctatctatacccccatcaacaatagcgttttctaaaaagtgctat 23925697  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 23925498 - 23925563
Alignment:
Q  4 gggttgatgaacaatggtttgagttgcagtactgtttggagtatttgtgagagagcatgagttttg 69  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  23925498 gggttgatgaacaaaggtttgagttgcagtactgtttggagtgtttgtgagagagagtgagttttg 23925563  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 23925728 - 23925801
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||  | ||||||||||||||||    
T  23925728 aaaagcgctatctaacccagtttttaacaaatttttcttagcgctttatgtaaagcgttataacaggtctatga 23925801  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 22939117 - 22939049
Alignment:
Q  84 aattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttt 151  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  22939117 aattttcataaagcacaaagatagcgtttgagaaaagcgctatctataccccctccaacaatagcgttt 22939049  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 24501516 - 24501605
Alignment:
Q  78 tttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    ||||| ||| |||||| | | ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||  ||||| |||||    
T  24501516 ttttttaatattcatataacccaaacatagcgtttgtgaaaaacgctatctatacccccttcaacaatagcgttttcttaaaagcgctat 24501605  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 27289026 - 27289098
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatg 228  Q
    ||||| ||||||||||| | ||||||| ||||||||||||||||||| || ||| |||||||||||| |||||    
T  27289026 aaaagcgctatctaacccattttttaaaaagtttttcttagcgctttttgcaaagtgctataacaggcctatg 27289098  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 22939003 - 22938931
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatg 228  Q
    ||||| ||||||||||| | |||| || ||||||||||||||||||| || ||| |||||||||||| |||||    
T  22939003 aaaagcgctatctaacccatttttcaaaaagtttttcttagcgctttctgcaaagtgctataacaggcctatg 22938931  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 24501636 - 24501707
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||| ||| ||||   |||||||||||||||||    
T  24501636 aaaagcgctatctaacccagtttttaacaagctttttttagcgttttctgaagggtgctataacaggtctat 24501707  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 11506291 - 11506337
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgcttt 202  Q
    |||||| | |||||||||||||||||||| |||||||||||||||||    
T  11506291 aaaagtaccatctaacctagtttttaacatgtttttcttagcgcttt 11506337  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 21740320 - 21740369
Alignment:
Q  178 tttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||||| |||||||||| |||||| |||||| |||||||||||||||||    
T  21740320 tttaacatgtttttcttaacgctttctgaaaagtgctataacaggtctat 21740369  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 21739198 - 21739246
Alignment:
Q  104 atagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttt 151  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  21739198 atagcgtttgtgaaaagagctatctataccccctccaacaatagcgttt 21739246  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 27288912 - 27288980
Alignment:
Q  84 aattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccc-catcaacaatagcgttt 151  Q
    |||||||||||||| ||||  ||||||||| ||||| |||||||||||||| |  ||||||||||||||    
T  27288912 aattttcataaagcacaaaggtagcgtttgagaaaaacgctatctataccctctccaacaatagcgttt 27288980  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 11513014 - 11513073
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgcta 215  Q
    |||||| | |||||||| ||||||||||| ||||||||||||||||| | |||| |||||    
T  11513014 aaaagtaccatctaacccagtttttaacatgtttttcttagcgctttctaaaaagtgcta 11513073  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 22198060 - 22197989
Alignment:
Q  157 aaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatg 228  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||    
T  22198060 aaagtgctatctaacctagtttttaacatgtttttcttagcgctttcttaaaagtgctataacaggtctatg 22197989  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 12630023 - 12630098
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttt 151  Q
    |||||| ||||||||| |||| || |||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  12630023 tttttttaattttcattaagcccagacatagggtttgtgaaaagcgctatctatacccccttcaacaatagcgttt 12630098  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 33737023 - 33737094
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| ||||||| |||||||||| |||||||||| || | | |||||||| ||||||||    
T  33737023 aaaagcgctatctaacccagttttttacaagttttttttagcgctttctgcagagtgctataataggtctat 33737094  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 33736902 - 33736992
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    |||||| ||||||||| |||| ||||||||||||||  | ||| ||||||||||| |||| |||||||||| |||| || ||||| |||||    
T  33736902 tttttttaattttcattaagcccaaacatagcgtttaaggaaaacgctatctatacccccctcaacaatagtgtttccctaaaagcgctat 33736992  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 12630143 - 12630214
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| | ||||| |||||||||| |||||  ||| |||| | |||||||||||||||||    
T  12630143 aaaagcgctatctaacccaattttttacaagttttttttagcattttctgaagagtgctataacaggtctat 12630214  T

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Target: scaffold0548 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 9972 - 9882
Alignment:
Q  139 aacaatagcgttttccaaaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    |||||||||||||   |||||| |||||||||||||||||||| || ||||||||||||||||| || ||| ||||||||||||| |||||    
T  9972 aacaatagcgtttatgaaaaagcgctatctaacctagtttttatcatgtttttcttagcgctttctgtaaagtgctataacaggtttatga 9882  T

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Target: scaffold0089 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 33043 - 32953
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttttccaaaaagtgctat 166  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||| | | |||||| |||||    
T  33043 tttttttaattttcataaaggccaaacatagcgtttgtgaaaagcgctatctataccccctccaacaatagcgtctgcaaaaaagcgctat 32953  T

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Target: scaffold0089; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 32922 - 32851
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  32922 aaaagcgctatctaacccagtttttaacatgtttttcttagcgctttctgaaaaccgctataacagatctat 32851  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 13371764 - 13371854
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttttccaaaaagtgctat 166  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||| | | |||||| |||||    
T  13371764 tttttttaattttcataaaggccaaacatagcgtttgtgaaaagcgctatctataccccctccaacaatagcgtctgcaaaaaagcgctat 13371854  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 15103032 - 15103122
Alignment:
Q  139 aacaatagcgttttccaaaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    |||||||||||||   |||||| |||||||||||||||||||| || ||||||||||||||||| || ||| ||||||||||||| |||||    
T  15103032 aacaatagcgtttatgaaaaagcgctatctaacctagtttttatcatgtttttcttagcgctttctgtaaagtgctataacaggtttatga 15103122  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 13371885 - 13371953
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtc 224  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  13371885 aaaagcgctatctaacccagtttttaacatgtttttcttagcgctttctgaaaaccgctataacaggtc 13371953  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 52613178 - 52613095
Alignment:
Q  142 aatagcgttttccaaaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtct 225  Q
    |||| ||||| || ||||| ||||||||||||||||||||||  ||||||||||||||||| | |||| |||||||||||||||    
T  52613178 aatatcgtttaccgaaaagcgctatctaacctagtttttaacgtgtttttcttagcgctttctaaaaagtgctataacaggtct 52613095  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 15097250 - 15097357
Alignment:
Q  116 aaaagcgctatctatacccc--atcaacaatagcgttttccaaaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgc 213  Q
    ||||| ||||||||||||||  | ||||||||||||||||  ||||| || ||||||| || ||||||||| |||||||||||| |||| | |||| |||    
T  15097250 aaaagtgctatctataccccgcaccaacaatagcgttttcttaaaagcgccatctaacttaatttttaacatgtttttcttagccctttctaaaaagtgc 15097349  T
Q  214 tataacag 221  Q
    ||||||||    
T  15097350 tataacag 15097357  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 20129586 - 20129516
Alignment:
Q  157 aaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    |||| ||||||||||||||||||| |||||||||| ||| |||||| |||| | |||||||||||||||||    
T  20129586 aaagcgctatctaacctagttttttacaagttttttttaacgctttctgaagagtgctataacaggtctat 20129516  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 19911203 - 19911268
Alignment:
Q  164 tatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    ||||||||| | |||||||||||||||| ||||||  ||||||||| |||| ||||| ||||||||    
T  19911203 tatctaacccaatttttaacaagttttttttagcgtattatgaaaagtgctctaacatgtctatga 19911268  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 20511979 - 20511908
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||    
T  20511979 aaaagcgctgtctaacctagtttttaacatgtttttcttagtgctttctgaaaaccgctataacaggtctat 20511908  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 22474354 - 22474443
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    |||||| ||||||||| |||| ||| ||||||||||| ||||| ||||||||||||||| |||||||||| |||| || ||||| |||||    
T  22474354 tttttttaattttcattaagcccaaccatagcgtttgagaaaaacgctatctataccccctcaacaatagtgtttccccaaaagcgctat 22474443  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 16729555 - 16729644
Alignment:
Q  78 tttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    ||||| |||||||||| | | ||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||  ||||| |||||    
T  16729555 ttttttaattttcatataacccaaacatagcgtttgtgaaaaacgctatctatacccccttcaacaatagtgttttcttaaaagcgctat 16729644  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 16729675 - 16729746
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||| ||||| ||||||| ||||| |||| |||||||||| |||| | |||||||||||||||||    
T  16729675 aaaagcgctatgtaacccagtttttcacaagctttttttagcgctttctgaagagtgctataacaggtctat 16729746  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 22474474 - 22474545
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| | ||||| |||||||||| |||||||||| || | | |||||||| ||||||||    
T  22474474 aaaagcgctatctaacccaattttttacaagttttttttagcgctttctgcagagtgctataataggtctat 22474545  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 20027930 - 20027840
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttttccaaaaagtgctat 166  Q
    |||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||| | ||||||||||| || | |||||| |||||    
T  20027930 tttttttaattttcataaaggccaaacataacgtttgtgaaaagcgctatctataccccctccaacaatagcgcttgcaaaaaagcgctat 20027840  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 8376202 - 8376141
Alignment:
Q  166 tctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  8376202 tctaacccagtttttaacatgtttttcttagcgctttctgaaaagtgctataacaggtctat 8376141  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 17943171 - 17943244
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    ||||| ||||||||| | | ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  17943171 aaaagcgctatctaatccaatttttaacaagttttccttagcgctttctgaaaagtgctataacaggtctatga 17943244  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 32664520 - 32664447
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    ||||| ||||||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||    
T  32664520 aaaagcgctatctaacccaatttttaacaagttttccttagcgctttctgaaaagtgctataacaggtttatga 32664447  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 17009874 - 17009945
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||||||| |||| | |||||||||||||||||    
T  17009874 aaaagcgctatctaacccagtttttaacaagctttttttagcgctttctgaagagtgctataacaggtctat 17009945  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 17943064 - 17943125
Alignment:
Q  91 ataaagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttt 151  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||    
T  17943064 ataaagcccaaacatagcgtttgtgacaagcgctatctataccccctccaacaatagcgttt 17943125  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 17009754 - 17009843
Alignment:
Q  78 tttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    ||||| ||| |||||| | | ||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||   |||||||||||    
T  17009754 ttttttaatattcatataacccaaacatagcgtttgtgaaaaacgctatctatacccccttcaacaatagcgcttttttaaaagtgctat 17009843  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 8376205 - 8376273
Alignment:
Q  161 tgctatctaacc-tagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatg 228  Q
    |||||||||||| | |||||| ||  ||||||||||||||||| |||||| ||||||||||||||||||    
T  8376205 tgctatctaaccctggtttttcacttgtttttcttagcgctttctgaaaagtgctataacaggtctatg 8376273  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 14481958 - 14481868
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    |||||| |||||| || |||| ||||||||||||||| | ||| ||||||||||| |||| ||||||| ||||||| || |||||| ||||    
T  14481958 tttttttaatttttattaagcccaaacatagcgtttgaggaaaacgctatctatacccccctcaacaacagcgtttccctaaaagtactat 14481868  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 32664624 - 32664566
Alignment:
Q  94 aagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagcgttt 151  Q
    |||| |||||||||||||||||| |||||||||||||||||| | ||||||||| ||||    
T  32664624 aagcccaaacatagcgtttgtgacaagcgctatctataccccctccaacaatagtgttt 32664566  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 20027810 - 20027737
Alignment:
Q  155 aaaaagtgctatctaacctag-tttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    |||||| ||||||||||| || ||||||||| ||||||||| ||||||| ||||||| ||| ||||||| ||||    
T  20027810 aaaaagcgctatctaacccagttttttaacatgtttttcttggcgctttttgaaaacagctttaacaggactat 20027737  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 36517067 - 36517015
Alignment:
Q  177 ttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    ||||||||| |||||||||||||||| |  ||| |||||||||||||||||||    
T  36517067 ttttaacaaatttttcttagcgcttttttgaaagtgctataacaggtctatga 36517015  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 49946990 - 49947079
Alignment:
Q  78 tttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    ||||| |||||||||| | | ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||  ||||| |||||    
T  49946990 ttttttaattttcatataacccaaacatagcgtttgtgaaaaacgctatctatacccccttcaacaatagcgttttcttaaaagcgctat 49947079  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 37941631 - 37941505
Alignment:
Q  104 atagcgtttgtgaaaagcgctatctataccccatc-aacaatagcgttttccaaaaagtgctatctaacctagtttttaacaagtttttcttagcgcttt 202  Q
    |||| |||||||| || ||||||| ||||||| |  |||||||||||||    ||||| ||||||||||| || |||||||| |||||||||||| ||||    
T  37941631 atagtgtttgtgagaaacgctatcgataccccctttaacaatagcgtttcttgaaaagcgctatctaacccagcttttaacatgtttttcttagctcttt 37941532  T
Q  203 atgaaaactgctataacaggtctatga 229  Q
     || ||| ||||||||||||| |||||    
T  37941531 ctgtaaagtgctataacaggtttatga 37941505  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 45837779 - 45837727
Alignment:
Q  176 tttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatg 228  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  45837779 tttttaacaagtttttcttagcgctttctgaaaagtgctataacacgtctatg 45837727  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 49947110 - 49947181
Alignment:
Q  156 aaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctat 227  Q
    ||||| ||||||||||| ||||||| ||||| |||| |||||||||| |||| | || ||||||||||||||    
T  49947110 aaaagcgctatctaacccagtttttcacaagctttttttagcgctttctgaagagtgttataacaggtctat 49947181  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 3312028 - 3311976
Alignment:
Q  176 tttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatg 228  Q
    |||| ||||||||||||||||| |||| || |||  |||||||||||||||||    
T  3312028 ttttaaacaagtttttcttagcactttctgtaaagcgctataacaggtctatg 3311976  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 17176302 - 17176233
Alignment:
Q  79 ttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccccat-caacaatagc 147  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  17176302 tttttaattttaataaagcccaaacatagcgtttgtgaaaagcgctatctataccccttccaacaatagc 17176233  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 17176182 - 17176110
Alignment:
Q  157 aaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||    
T  17176182 aaagcgctatctaacccaatttttaacaagttttccttagcgctttctgaaaagtgctataataggtctatga 17176110  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 36478860 - 36478773
Alignment:
Q  142 aatagcgttttccaaaaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    |||||||||| | ||||| |||||||||||| ||||||||||| || ||| |||||||||| |||||| |||||||| || |||||||    
T  36478860 aatagcgtttacaaaaaaatgctatctaacccagtttttaacatgtcttttttagcgctttctgaaaagtgctataatagatctatga 36478773  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 36478954 - 36478877
Alignment:
Q  91 ataaagctcaaaca-tagcgtttgtgaaaagcgctatctataccccatc-aacaatagcgttttccaaaaagtgctat 166  Q
    |||||| ||||||| ||||||||   |||| ||||||||||||||| || ||||||||||||||| |||||| |||||    
T  36478954 ataaagttcaaacaatagcgtttcgtaaaaacgctatctataccccctccaacaatagcgttttctaaaaagcgctat 36478877  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 6813991 - 6813919
Alignment:
Q  157 aaagtgctatctaacctagtttttaacaagtttttcttagcgctttatgaaaactgctataacaggtctatga 229  Q
    |||| ||||||||||| | ||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||||    
T  6813991 aaagcgctatctaacccaatttttaacatgtttttcttagcgctttctgaaaagcgctataacaggcctatga 6813919  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 25043086 - 25043176
Alignment:
Q  77 ttttttaaattttcataaagctcaaacatagcgtttgtgaaaagcgctatctata-ccccatcaacaatagcgttttccaaaaagtgctat 166  Q
    |||||| ||||||||| |||| ||||||||||||||| | ||| ||||||||||| |||| | ||||||||||||| || ||||| |||||    
T  25043086 tttttttaattttcattaagcccaaacatagcgtttgaggaaaacgctatctatacccccctaaacaatagcgtttccctaaaagcgctat 25043176  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 16232463 - 16232380
Alignment:
Q  84 aattttcataaagctcaaacatagcgtttgtgaaaagcgctatctataccc-catcaacaatagcgttttccaaaaagtgctat 166  Q
    |||||||||||||| ||||   |||||||| |||||||||||||||||||| |  |||||||| ||||| | ||||| ||||||    
T  16232463 aattttcataaagcccaaagtaagcgtttgcgaaaagcgctatctataccctctccaacaataacgtttgctaaaaaatgctat 16232380  T

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