View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_278 (Length: 229)
Name: NF6865A_low_278
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_278 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4584874 - 4585099
Alignment:
| Q |
1 |
tttgcaacgtcattgcagcagttatcttgactgtatcatccacagtttgccgtaatataaaggttggcaatgtaaccgcgtcagtaaattaaaagcatga |
100 |
Q |
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| T |
4584874 |
tttgcaacgtcattgcagcagttatcttgactgtatcgtccacagtttgccgtaatataaaggttggcaatgtaaccgcgtcagtaaattaaaagcatga |
4584973 |
T |
|
| Q |
101 |
taccactaaaaatggaactaaaatgaaaatctgaaagcttgat-atccctaatactgaaaatagtat-aaatacaatgaaaagattgcataact-aaaca |
197 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
4584974 |
taccagtaaaaatggaactaaaatgaaaatctgaaagcttgataatccctaatactgaaaacggtataaaatacaatgaaaagattgcataactaaaaca |
4585073 |
T |
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| Q |
198 |
actctatgaaaatctatgccaaatct |
223 |
Q |
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||||||||||||| |||||||||||| |
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| T |
4585074 |
actctatgaaaatttatgccaaatct |
4585099 |
T |
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