View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_281 (Length: 228)

Name: NF6865A_low_281
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_281
NF6865A_low_281
[»] chr5 (20 HSPs)
chr5 (45-228)||(7742376-7742559)
chr5 (50-199)||(18178585-18178734)
chr5 (51-197)||(19763413-19763558)
chr5 (56-165)||(23157339-23157448)
chr5 (45-228)||(20083937-20084120)
chr5 (56-214)||(18281716-18281875)
chr5 (50-228)||(22930410-22930588)
chr5 (63-228)||(20695088-20695253)
chr5 (55-199)||(30791064-30791208)
chr5 (50-228)||(31340842-31341018)
chr5 (56-165)||(17695006-17695115)
chr5 (50-221)||(16622136-16622307)
chr5 (122-221)||(25594151-25594250)
chr5 (56-205)||(24131080-24131229)
chr5 (77-164)||(25368111-25368198)
chr5 (83-153)||(25681076-25681146)
chr5 (1-34)||(7742584-7742617)
chr5 (45-110)||(22643550-22643615)
chr5 (48-125)||(17381598-17381675)
chr5 (83-143)||(24846614-24846674)
[»] chr7 (16 HSPs)
chr7 (56-213)||(5636657-5636814)
chr7 (77-228)||(24596486-24596638)
chr7 (50-212)||(22334791-22334954)
chr7 (135-214)||(9552676-9552756)
chr7 (82-221)||(4091985-4092124)
chr7 (161-228)||(15757981-15758048)
chr7 (56-199)||(9800992-9801137)
chr7 (83-228)||(18466987-18467132)
chr7 (114-221)||(20017493-20017598)
chr7 (56-228)||(9760550-9760724)
chr7 (83-211)||(30406051-30406178)
chr7 (56-156)||(4829279-4829379)
chr7 (101-192)||(21537072-21537164)
chr7 (83-165)||(2352888-2352971)
chr7 (48-226)||(2092863-2093038)
chr7 (81-176)||(11467621-11467716)
[»] chr4 (14 HSPs)
chr4 (56-228)||(29437873-29438046)
chr4 (48-199)||(26160257-26160408)
chr4 (56-228)||(19602227-19602400)
chr4 (48-155)||(31859446-31859554)
chr4 (50-176)||(21077716-21077842)
chr4 (52-192)||(23354035-23354175)
chr4 (48-228)||(33519475-33519655)
chr4 (50-192)||(22120109-22120251)
chr4 (46-148)||(12028460-12028562)
chr4 (133-228)||(5676720-5676815)
chr4 (135-192)||(26188283-26188340)
chr4 (50-106)||(10576918-10576974)
chr4 (83-153)||(16441781-16441851)
chr4 (139-228)||(10576993-10577082)
[»] chr3 (17 HSPs)
chr3 (45-228)||(11475297-11475480)
chr3 (56-198)||(26298229-26298372)
chr3 (45-199)||(21828721-21828875)
chr3 (55-196)||(19285548-19285688)
chr3 (77-216)||(19542594-19542734)
chr3 (114-221)||(2729089-2729196)
chr3 (66-156)||(20892123-20892213)
chr3 (59-174)||(26387347-26387464)
chr3 (47-214)||(10342198-10342366)
chr3 (50-192)||(22992210-22992353)
chr3 (80-228)||(18474678-18474827)
chr3 (71-228)||(26419217-26419373)
chr3 (50-158)||(16970892-16971000)
chr3 (48-199)||(19218714-19218864)
chr3 (56-112)||(23907894-23907950)
chr3 (50-112)||(22991076-22991138)
chr3 (157-226)||(8401897-8401966)
[»] chr2 (14 HSPs)
chr2 (50-228)||(18819125-18819303)
chr2 (48-174)||(21844367-21844493)
chr2 (83-228)||(17884055-17884200)
chr2 (48-170)||(21842744-21842866)
chr2 (48-165)||(31262403-31262520)
chr2 (48-192)||(21504105-21504249)
chr2 (87-155)||(27917587-27917655)
chr2 (47-211)||(15454010-15454172)
chr2 (58-170)||(17862842-17862953)
chr2 (56-221)||(18235809-18235987)
chr2 (66-143)||(39732119-39732196)
chr2 (48-121)||(31274296-31274366)
chr2 (56-181)||(24188464-24188585)
chr2 (56-155)||(25460377-25460477)
[»] chr6 (11 HSPs)
chr6 (45-228)||(22262820-22263003)
chr6 (47-187)||(9396133-9396273)
chr6 (48-201)||(12971874-12972022)
chr6 (45-146)||(17198379-17198480)
chr6 (49-163)||(32930026-32930140)
chr6 (83-199)||(13830426-13830542)
chr6 (161-228)||(1558327-1558394)
chr6 (45-199)||(26499374-26499526)
chr6 (50-228)||(16174843-16175020)
chr6 (83-221)||(16528130-16528268)
chr6 (134-189)||(15382214-15382270)
[»] scaffold0190 (1 HSPs)
scaffold0190 (68-221)||(11164-11317)
[»] chr1 (17 HSPs)
chr1 (58-228)||(21549102-21549273)
chr1 (47-178)||(27460418-27460549)
chr1 (54-153)||(25126898-25126997)
chr1 (50-228)||(15298362-15298540)
chr1 (63-220)||(31314004-31314161)
chr1 (136-228)||(14744936-14745028)
chr1 (50-228)||(25778181-25778360)
chr1 (56-228)||(52270712-52270892)
chr1 (85-210)||(25665296-25665422)
chr1 (83-228)||(23223857-23224000)
chr1 (65-221)||(25730937-25731094)
chr1 (97-213)||(11984726-11984841)
chr1 (143-221)||(34533169-34533247)
chr1 (131-199)||(23421139-23421207)
chr1 (50-161)||(34934862-34934968)
chr1 (49-192)||(25726190-25726333)
chr1 (49-192)||(25734598-25734741)
[»] chr8 (11 HSPs)
chr8 (51-227)||(30850545-30850720)
chr8 (66-192)||(27085097-27085222)
chr8 (60-192)||(11437854-11437987)
chr8 (56-211)||(30544180-30544338)
chr8 (55-228)||(24927346-24927519)
chr8 (50-192)||(28074935-28075077)
chr8 (58-228)||(12774354-12774525)
chr8 (108-189)||(13583142-13583224)
chr8 (122-199)||(24094676-24094751)
chr8 (47-153)||(5569737-5569842)
chr8 (51-181)||(6887743-6887872)
[»] scaffold0386 (2 HSPs)
scaffold0386 (83-221)||(11258-11396)
scaffold0386 (50-221)||(8228-8399)
[»] scaffold0065 (1 HSPs)
scaffold0065 (60-199)||(12731-12874)
[»] scaffold0650 (1 HSPs)
scaffold0650 (135-221)||(5233-5316)
[»] scaffold0337 (1 HSPs)
scaffold0337 (64-199)||(3603-3741)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 7742559 - 7742376
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742559 cctagttttcttctcttaacccctaagcaatgatgcattataaatagagacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 7742460  T
Q  145 gtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  7742459 gtcaaacatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcaatggtatatttttctactgttttctaatga 7742376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 18178585 - 18178734
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| ||||| |||||||||||| || ||||||||||||| ||||||    
T  18178585 ttttcttctcttaacccctaagtaatgatgcaatatcaatagagacccttgcacacttttttattcattcaaaaagctaatggtacaaggcaatggtcaa 18178684  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
     ||||| ||||| |||   ||||||||||||| |||||||||| ||||||    
T  18178685 acatcagagcttaaaggtggaggatcttcatcctcctcttgttctctcta 18178734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 19763558 - 19763413
Alignment:
Q  51 tttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaag 150  Q
    |||||||||||||||  |||| | ||||| | ||||||||   ||||||  ||||||||||| |||||||||||| |||||||||||||||||||||||     
T  19763558 tttcttctcttaacca-taagtagtgatgtactataaatatggacccttatacactcttttattcattcaaaaagctagtggtacaaggcaagggtcaaa 19763460  T
Q  151 catcaaagcttcaagtcagaggatcttcatcatcctcttgttttctc 197  Q
    ||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  19763459 catcaaagcttcaaggcagaggatcttcatcctcctcttgttctctc 19763413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 23157448 - 23157339
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||||||||||| ||| |||||||||||| ||| ||||||||||||| ||||| ||||||| |||||| |  ||||||||||||||||||||||||    
T  23157448 tctcttaacccctaagtaatcatgcattataaaaagagacccttgcacactattttattcattcagaaagttggcagtacaaggcaagggtcaagcatca 23157349  T
Q  156 aagcttcaag 165  Q
     |||||||||    
T  23157348 gagcttcaag 23157339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 20083937 - 20084120
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    |||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||| || ||||||||| || || | |||| ||| ||||||| | || |    
T  20083937 cctatttttcttctgttaacccctaagtaatgatgtaatataaatagataccctttcatactcttttattcttttagaaagctagaggtacaaagaaaag 20084036  T
Q  145 gtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||||||||| | |||||||  ||| |||| |||||||||| ||||| |||||| | ||| ||||| || | |||| ||||||    
T  20084037 gtcaagcatcagaacttcaaggaagaagatcctcatcatcctgttgttctctctagggtatgtttttatattattttgtaatga 20084120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 18281875 - 18281716
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||||||||||| ||| ||||| |||||||||  ||||||||||||||||||  ||||||| |||| |||  || ||||||||  ||||| |||||    
T  18281875 tctcttaacccctaagtaatcatgcaatataaatagtgacccttgcacactcttttcttcattcagaaagctagcagtgcaaggcaaacgtcaaacatca 18281776  T
Q  156 -aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttcta 214  Q
      |||||||||  |||||| || |||| |||||||||| |||||| | ||||||||||||    
T  18281775 ggagcttcaaggtagaggacctccatcgtcctcttgttctctctagggtatatttttcta 18281716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 22930410 - 22930588
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    ||||||||||||||||  || | ||||||||| |||||||| | | |||| ||| |||||||| ||||||| |||| ||   ||||||||||||||||||    
T  22930410 ttttcttctcttaacctttaggtaatgatgcactataaataaacatccttacaccctcttttattcattcataaaggtaccagtacaaggcaagggtcaa 22930509  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     ||| | ||||| |||  ||||||||| |||| |||| ||||| |||||| | ||| |||||||| |||||| ||||||    
T  22930510 acataagagctttaaggtagaggatctccatcctccttttgttatctctaggttatgtttttctattgttttgtaatga 22930588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 20695088 - 20695253
Alignment:
Q  63 acccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttc 162  Q
    |||| |||| ||||||| | |||||||||| || |||||| ||  ||| | ||||||| |||| |||||||| |||||||||||||||||||  | ||||    
T  20695088 acccgtaagtaatgatgtactataaatagagactcttgcaaaccttttcattcattcagaaagctagtggtagaaggcaagggtcaagcatcgcaacttc 20695187  T
Q  163 aagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||| ||  ||||||||||| || |||| || |||||| | ||| |||||||| |||||| ||||||    
T  20695188 aaggcaatggatcttcatcctcttctttttctctctagggtatgtttttctattgttttgtaatga 20695253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 30791064 - 30791208
Alignment:
Q  55 ttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatc 154  Q
    |||||||||  |||||| |||||||   |||| ||| | |||||||||||||||| |||| ||||| |||||| || | |||||| |||| |||||||||    
T  30791064 ttctcttaaatcctaagtaatgatgtgctatatatatagacccttgcacactcttctaattattcagaaagttcgtaggacaaggaaaggttcaagcatc 30791163  T
Q  155 aaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    | ||||| ||| ||||||||||| ||  |||||||||| ||||||    
T  30791164 agagctttaaggcagaggatcttgattctcctcttgttctctcta 30791208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 31341018 - 31340842
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    ||||||||||| || | ||||| |||| || | |||||||||| ||||||||||||||||  | ||||||  |||| |||   ||||| |||||||||||    
T  31341018 ttttcttctctaaatctctaagtaatggtgtactataaatagagacccttgcacactcttaaattcattctgaaagctagatatacaaagcaagggtcaa 31340919  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     |||| |||||||||| ||||||||||  ||| || |||||  |||||| | |||| |||||||| |||||| ||||||    
T  31340918 acatcgaagcttcaaggcagaggatctcaatcctcttcttg--ttctctcttatatgtttttctattgttttgtaatga 31340842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 17695115 - 17695006
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||| ||||||| ||||||||| |||||||||| |  ||||||| | |||||| ||||||||||||||||  ||||||||||||| | ||  ||||    
T  17695115 tctcttaaaccctaagtaatgatgcactataaatagagagtcttgcacgcacttttattcattcaaaaagttagatgtacaaggcaaggcttaaatatca 17695016  T
Q  156 aagcttcaag 165  Q
     |||||||||    
T  17695015 gagcttcaag 17695006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 16622307 - 16622136
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||| ||||||| | ||||| ||| || ||||||||||||| || ||||||||  |||||| | ||||| |||| ||||||| ||||||||| |||||    
T  16622307 ttttctcctcttaaactctaagtaatcatacattataaatagagactcttgcacatacttttatttattcataaagctagtggttcaaggcaagagtcaa 16622208  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    |||| | || | |||| | |||| ||| |||| | |||||||| ||| || | ||| |||||||| ||||||    
T  16622207 gcattagagttccaagactgagggtctccatccttctcttgttctctttagggtatgtttttctattgtttt 16622136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 25594250 - 25594151
Alignment:
Q  122 aaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    |||| ||||||| |||||||||||| || ||||| |||| ||||  ||||| |||||||| |||||||||| |||||| ||||| |||||||| ||||||    
T  25594250 aaagctagtggttcaaggcaagggttaaacatcagagctccaaggaagagggtcttcatcctcctcttgttctctctaagatatgtttttctattgtttt 25594151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 24131080 - 24131229
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||| ||||| | ||||||| | |||||||||| |||||| || || | |||||||||| | |||| ||||| |||| ||||||||||||||||||    
T  24131080 tctcttaaaccctatgtaatgatgaactataaatagagacccttacatacacctttaatcatttagaaagctagtgatacatggcaagggtcaagcatca 24131179  T
Q  156 aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatat 205  Q
     | |||  || || ||||| ||| | ||| ||||||| |||||| |||||    
T  24131180 gaacttttaggcaaaggattttcctaatcttcttgttctctctaggatat 24131229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 25368111 - 25368198
Alignment:
Q  77 atgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaa 164  Q
    ||||| |||||||||| ||| ||||||||| ||||| ||||| | |||||| | | |||||| |||| ||||||||||| ||||||||    
T  25368111 atgcactataaatagagaccattgcacactattttattcatttagaaagttggcgttacaagacaagagtcaagcatcagagcttcaa 25368198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 25681076 - 25681146
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcat 153  Q
    |||||||||| || |||||||||  | ||||| ||||| |||| ||||||| |||||||||||||||||||    
T  25681076 tataaatagagacacttgcacacattattaattattcagaaagctagtggttcaaggcaagggtcaagcat 25681146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7742617 - 7742584
Alignment:
Q  1 ttgttgtttgcttgtttttcaagttggatcggtg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  7742617 ttgttgtttgcttgtttttcaagttggatcggtg 7742584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 22643615 - 22643550
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttt 110  Q
    |||| |||||||||||||  ||||||| ||||||||| | ||| |||| |||||||||||||||||    
T  22643615 cctatttttcttctcttactccctaagtaatgatgcagtgtaactagagacccttgcacactcttt 22643550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 17381675 - 17381598
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaag 125  Q
    |||||||||||||||| | ||| | ||| || ||||||||||||| |||||| |||||  ||||| | ||||||||||    
T  17381675 agttttcttctcttaaacactatgtaatcatacattataaatagagacccttacacacatttttatttattcaaaaag 17381598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 24846614 - 24846674
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaag 143  Q
    |||||||||| || ||||||| | |||||| ||||||| ||| || |||||||||||||||    
T  24846614 tataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 24846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 5636657 - 5636814
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||| | ||||| ||||||||| |||||||||| |||||||||||| |||||| ||||||| |||| |||| ||||||||||| ||||||||||||    
T  5636657 tctcttaatcactaagtaatgatgcactataaatagagacccttgcacacacttttattcattcagaaagctagtagtacaaggcaatggtcaagcatca 5636756  T
Q  156 aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttct 213  Q
    |||||||||| |||| ||||| || | |||||||||| |||||| | ||| |||||||    
T  5636757 aagcttcaaggcagatgatctccaacctcctcttgttctctctagggtatttttttct 5636814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 24596638 - 24596486
Alignment:
Q  77 atgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aagcttcaagtcagaggatc 175  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |  ||||||||||||||||||||||||||  ||||||||| |||| ||||    
T  24596638 atgcattataaatagagaccattgcacactcttttattcattcagaaagctgatggtacaaggcaagggtcaagcatcaggagcttcaaggcagatgatc 24596539  T
Q  176 ttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    |  |||||||||||||| ||||||   ||| ||||| || |||||| ||||||    
T  24596538 tctatcatcctcttgttctctctagtgtatgtttttatattgttttataatga 24596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 22334954 - 22334791
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||| ||||||||||||||||| ||||||||| |||||||| | | | ||| ||||||||||| | ||||| |||| |||||||||||||||||||||||    
T  22334954 tttttttctcttaacccctaagtaatgatgcactataaataaagatcattgaacactcttttattaattcagaaagctagtggtacaaggcaagggtcaa 22334855  T
Q  150 gcatcaa-agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttc 212  Q
    ||||||| | |||  || |||||||||| |||  |||||||| | | |||| ||||| ||||||    
T  22334854 gcatcaagaactttcaggcagaggatctccattctcctcttggtctttctaagatatgtttttc 22334791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 9552676 - 9552756
Alignment:
Q  135 caaggcaagggtcaagcatcaa-agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttcta 214  Q
    |||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||| |||||| | ||||||||||||    
T  9552676 caaggcaagggtcaagcatcaagagcttcaaggaagaggatctccatcatcctcttgttctctctagggtatatttttcta 9552756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 4092124 - 4091985
Alignment:
Q  82 ttataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagctt-caagtcagaggatcttcat 180  Q
    ||||||||||| |||||| |||||  | ||| ||||||| |||| ||| |||  |||||||||||||||||||| || || |||| |||||||||| |||    
T  4092124 ttataaatagagaccctttcacacattattattcattcagaaagctagcggttgaaggcaagggtcaagcatcagaggttccaaggcagaggatctccat 4092025  T
Q  181 catcctcttgttttctctatgatatatttttctactgtttt 221  Q
    | |||||||||| |||||| | ||| |||||||| ||||||    
T  4092024 cttcctcttgttctctcta-ggtatgtttttctattgtttt 4091985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 15757981 - 15758048
Alignment:
Q  161 tcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||||| | |||| ||||||    
T  15757981 tcaaggcagaggatcttcatcatcctcttgttatctctaggatatatttttctattattttgtaatga 15758048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 9800992 - 9801137
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggta-caaggcaagggtcaagcatc 154  Q
    |||||||||||||||| ||   || | |||||||||| ||| ||||| || |||| | |||||||||||  ||| |||  ||||||||||||||||||||    
T  9800992 tctcttaacccctaagaaaccttgaactataaatagagaccgttgcatacactttaactcattcaaaaaactagcggtggcaaggcaagggtcaagcatc 9801091  T
Q  155 aa-agcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    || ||||| |||  ||||||||| |||| |||||||||| ||||||    
T  9801092 aagagctttaaggaagaggatctccatcctcctcttgttctctcta 9801137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 18466987 - 18467132
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatca 182  Q
    |||||||||| ||| ||||||||| ||||| ||||| | |||| ||  |||||||| ||| ||||||| |||| |||||||||  ||||||| | | ||     
T  18466987 tataaatagagacctttgcacactattttattcattgagaaagctaacggtacaagacaaaggtcaagaatcatagcttcaaggtagaggatttccctcc 18467086  T
Q  183 tcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    |||||||| |||| ||  | |||||||||||| |||||| ||||||    
T  18467087 tcctcttgctttcactggggtatatttttctattgttttgtaatga 18467132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 20017493 - 20017598
Alignment:
Q  114 tcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttct 213  Q
    ||||||| |||||||||||| ||||||||||||||| ||| |||| | |||| |  |||||||||||| |||||||||| |||||  | ||| |||||||    
T  20017493 tcattcataaagttagtggttcaaggcaagggtcaaacattaaagttccaaggc--aggatcttcatcttcctcttgttctctcttggctatgtttttct 20017590  T
Q  214 actgtttt 221  Q
    | ||||||    
T  20017591 attgtttt 20017598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 9760550 - 9760724
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggt-acaaggcaagggtcaagcatc 154  Q
    |||||||||||||||| ||   || | |||||||||| ||| ||||| || |||| | |||||||||||  ||| |||  |||| |||||||||| ||||    
T  9760550 tctcttaacccctaagaaaccttgaactataaatagagaccgttgcatacactttaactcattcaaaaaactaggggtggcaagacaagggtcaaccatc 9760649  T
Q  155 aa-agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    || |||||||||  ||||||||| |||| |||| ||||| |||||| | ||| |||||||| | |||| ||||||    
T  9760650 aagagcttcaaggaagaggatctccatcctcctattgttctctctaaggtatgtttttctattattttgtaatga 9760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 30406051 - 30406178
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aagcttcaagtcagaggatcttcatc 181  Q
    |||||||||| |||||||||||  |||||| ||||||| |||| ||| ||||||||| ||  |||||||||||  ||| ||||| |||| |||||||||     
T  30406051 tataaatagaaacccttgcacaaacttttattcattcataaagctagcggtacaaggtaatagtcaagcatcaggagcatcaagccagatgatcttcat- 30406149  T
Q  182 atcctcttgttttctctatgatatattttt 211  Q
     |||||||||  ||| ||| ||||||||||    
T  30406150 -tcctcttgtactctttatcatatattttt 30406178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 4829279 - 4829379
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||||||||||| | | || || ||| |||||| || | |||||| | ||||| ||||| | |||| ||| |||||||||||||||||||||||||    
T  4829279 tctcttaacccctaagtagtcatccactatgaatagagactcatgcacattattttattcatttagaaagctagcggtacaaggcaagggtcaagcatca 4829378  T
Q  156 a 156  Q
    |    
T  4829379 a 4829379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 21537164 - 21537072
Alignment:
Q  101 cacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaa-agcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    |||||| ||||| |||||||||||| ||| ||||||||| |||||| ||||||||| ||||||||   ||||||||| |||| |||| |||||    
T  21537164 cacactattttattcattcaaaaagctagcggtacaaggaaagggtaaagcatcaagagcttcaatggagaggatctccatcttcctgttgtt 21537072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 2352971 - 2352888
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaa-agcttcaag 165  Q
    |||||||||| ||| ||| | || |||||| |||||||||||||| || ||||||||||||| |||| |||||| |||||||||    
T  2352971 tataaatagagaccattgaatacacttttattcattcaaaaagttggtagtacaaggcaaggatcaaacatcaatagcttcaag 2352888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 2093038 - 2092863
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    |||| |||||||||||||| |||  ||||||| | |||||||||| | |    |||||||||||| |||||||||| |  |  |||||||||||| ||||    
T  2093038 agttctcttctcttaacccataaataatgatgtactataaatagagatca---cacactcttttattcattcaaaacgcaaccggtacaaggcaatggtc 2092942  T
Q  148 aagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaat 226  Q
    || |||||||  |||||| || | |||||| ||| ||||| |||| ||| || | ||  |||||||| |||||| ||||    
T  2092941 aaccatcaaaatttcaaggcaaatgatctttatcttcctcatgttctctatagggtacgtttttctattgttttgtaat 2092863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 11467716 - 11467621
Alignment:
Q  81 attataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatct 176  Q
    ||||||||||||  | |||||||||||||||| ||||| |||||| |||  |||||||  |||| |||  |||||||||||||   ||||||||||    
T  11467716 attataaatagaggctcttgcacactcttttattcatttaaaaagatagcagtacaagataaggttcagacatcaaagcttcagagcagaggatct 11467621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 29437873 - 29438046
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||||||||||| ||| ||||| |||||||||| || ||||||||||||| || ||||||| |||  ||||||||||||||||||||||||||| |    
T  29437873 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattcattcagaaaactagtggtacaaggcaagggtcaagcatta 29437972  T
Q  156 a-agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    | |||||||||   |||||||| |||||| |||||||| |||||| | ||| |||||||| |||||| ||||||    
T  29437973 agagcttcaaggacgaggatctccatcattctcttgttatctctagggtatgtttttctattgttttgtaatga 29438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 26160257 - 26160408
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    ||||||||||||||||||| |||| ||| ||||  |||||||||| || |||||||||||||||| ||||||| |||| ||| |||||||| ||||| ||    
T  26160257 agttttcttctcttaacccataagtaattatgccctataaatagagactcttgcacactcttttattcattcagaaagctagcggtacaagacaaggatc 26160356  T
Q  148 aagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
     ||||| | |||||||||||||| ||||| |||| |||||||||| ||||||    
T  26160357 tagcataagagcttcaagtcagatgatctacatcctcctcttgttctctcta 26160408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 19602227 - 19602400
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||||||| ||| ||| |||||||||||||||| ||||||| ||||||||||  ||||||| |||| ||| ||||||||||||||| |||||||||    
T  19602227 tctcttaaccccgaagtaatcatgcattataaatagagacccttgtacactctttttttcattcagaaagctagcggtacaaggcaagggccaagcatca 19602326  T
Q  156 -aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
      ||||||||| |||||||| |  |||||||| ||||| |||| | | ||| |||||||| |||||| ||||||    
T  19602327 ggagcttcaaggcagaggatttctatcatccttttgttatctcgagggtatgtttttctattgttttgtaatga 19602400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 31859554 - 31859446
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgca-ttataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt 146  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||| ||||||| |||  |||  |||||||||| ||||    
T  31859554 agttttcttctcttaacccctaagtaatgatgcacttataagtagagacccttgcacactcttttattcattcagaaaactagatgtacaaggcaggggt 31859455  T
Q  147 caagcatca 155  Q
    ||| |||||    
T  31859454 caaacatca 31859446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 21077716 - 21077842
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||||||||||| ||||||  | |||||||||| |||||||  |||| | ||| |||||||||||| ||| | ||||||| |||||||||    
T  21077716 ttttcttctcttaacccctaagtaatgatctactataaatagagacccttgtccactatcttattcattcaaaaagctagcgatacaaggtaagggtcaa 21077815  T
Q  150 gcatcaaagcttcaagtcagaggatct 176  Q
     ||||| ||||||||| || |||||||    
T  21077816 tcatcagagcttcaagacataggatct 21077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 23354035 - 23354175
Alignment:
Q  52 ttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagc 151  Q
    |||||||||||||||||||| ||||||| |||||||||| | || || ||| ||||||||| ||||||| ||||  |   ||||||||||| |||||| |    
T  23354035 ttcttctcttaacccctaagtaatgatgtattataaataaagactctcgcaaactcttttattcattcagaaagccaacagtacaaggcaaaggtcaaac 23354134  T
Q  152 atcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    |||| ||||||||  |||||||||| |||| || |||||||    
T  23354135 atcagagcttcaaagcagaggatctccatcctcatcttgtt 23354175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 33519475 - 33519655
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    |||||| ||||| ||||||||||  ||||||  | |||||||| | ||||||||||||||||||| ||||||| |||  |||  ||| ||||||||||||    
T  33519475 agttttattctcgtaacccctaattaatgatatactataaataaagacccttgcacactcttttattcattcagaaatctagcagtataaggcaagggtc 33519574  T
Q  148 aagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    || ||||| ||||||||| || | ||| |  |||||||| ||||| |||||  | |||||||||||| ||| || ||||||    
T  33519575 aaacatcagagcttcaaggcaaaagatatctatcatccttttgttctctcttgggtatatttttctattgtcttataatga 33519655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 22120109 - 22120251
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||||||||||| ||||||| |    ||||||| |||||||||||| | |||| ||||||| ||   |||  ||||||||||||||||||    
T  22120109 ttttcttctcttaacccctaagtaatgatgtacccaaaatagagacccttgcacacacatttattcattcagaatactagctgtacaaggcaagggtcaa 22120208  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    |||||| |||| |||| || | ||||| |||| |||| |||||    
T  22120209 gcatcatagctccaaggcatatgatctacatcctccttttgtt 22120251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 12028562 - 12028460
Alignment:
Q  46 ctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaaggg 145  Q
    ||||| ||||||||||||| |  ||| || |||||| |||||||||| || |||||||||||||||| ||||||| ||||||||  ||||||| ||| ||    
T  12028562 ctagtattcttctcttaactcacaagtaaagatgcactataaatagagactcttgcacactcttttattcattcagaaagttagcagtacaagacaatgg 12028463  T
Q  146 tca 148  Q
    |||    
T  12028462 tca 12028460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 5676720 - 5676815
Alignment:
Q  133 tacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||||||||||| ||||||||| || ||||||  |||  || |||||| |||||||||| | |||||| ||| |||||||| |||||| ||||||    
T  5676720 tacaaggcaagggccaagcatcagagtttcaaggtagataattttcatcctcctcttgttctttctatggtatgtttttctattgttttgtaatga 5676815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 26188283 - 26188340
Alignment:
Q  135 caaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    ||||||||| ||||||||||| || | |||| ||||||||||||||| ||||||||||    
T  26188283 caaggcaagagtcaagcatcagagttccaaggcagaggatcttcatcctcctcttgtt 26188340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 10576918 - 10576974
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacact 106  Q
    ||||||||||||||||| |||| | | ||||| |||||||||| |||||||||||||    
T  10576918 ttttcttctcttaacccgtaagtatttatgcactataaatagagacccttgcacact 10576974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 16441851 - 16441781
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcat 153  Q
    |||||||||| |||||||| |||| || || ||||| | |||||| || |||||||||||| |||||||||    
T  16441851 tataaatagagacccttgcgcactattatattcatttagaaagttggtagtacaaggcaagagtcaagcat 16441781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 10576993 - 10577082
Alignment:
Q  139 gcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||||||||||||||| ||||| |||  ||||||||| | || |||||||||  |||||| | ||| ||||| || |||||| ||||||    
T  10576993 gcaagggtcaagcatcagagcttgaaggaagaggatctccctcctcctcttgtcctctctagggtatgtttttatattgttttgtaatga 10577082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 11475297 - 11475480
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    |||||||||||||| |||||||||||| ||||||| | |||||||||| || |||||||||||||||| ||||||| |||| ||| ||| ||||||||||    
T  11475297 cctagttttcttcttttaacccctaagtaatgatgtaatataaatagagactcttgcacactcttttattcattcagaaagctagcggtgcaaggcaagg 11475396  T
Q  145 gtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     ||||||||||||||||||||  | |||||||| ||| |   |||||| |||||| | ||| ||||| || |||||| ||||||    
T  11475397 atcaagcatcaaagcttcaaggtaaaggatctttatccttaccttgttctctctaaggtatgtttttatattgttttgtaatga 11475480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 26298229 - 26298372
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||||||||||||| ||| |||||||||||||||| || |||||||||||||||| | ||| | |||| ||||| |||||| ||||||||||||||||    
T  26298229 tctcttaacccctaaggaatcatgcattataaatagagactcttgcacactcttttattaattgagaaagctagtgctacaagtcaagggtcaagcatca 26298328  T
Q  156 -aagcttcaagtcagaggatcttcatcatcctcttgttttctct 198  Q
      |||||||||  |||||||||||||| |||||||||| |||||    
T  26298329 tgagcttcaaggaagaggatcttcatcctcctcttgttgtctct 26298372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 21828875 - 21828721
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    |||||||||||||||  |||||||||| ||||||| | |||||||||| ||||||| ||| || |||| ||||||| |||| ||| || |||| ||||||    
T  21828875 cctagttttcttctccgaacccctaagtaatgatgaactataaatagagacccttgtacattcatttattcattcagaaagctagcggcacaatgcaagg 21828776  T
Q  145 gtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    ||||||||| | ||||||||| || ||||||| |||| |||||||||| ||||||    
T  21828775 gtcaagcataagagcttcaaggcaaaggatctccatcttcctcttgttctctcta 21828721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 19285548 - 19285688
Alignment:
Q  55 ttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatc 154  Q
    ||||| ||||||| ||| ||||||||| |||||||| | ||| ||| ||||||||||| ||||||| |||| || |||||||||||||||||||| ||||    
T  19285548 ttctcctaaccccgaagtaatgatgcactataaataaagacctttg-acactcttttattcattcagaaagctaatggtacaaggcaagggtcaaacatc 19285646  T
Q  155 aaagcttcaagtcagaggatcttcatcatcctcttgttttct 196  Q
      ||||||||| ||||||||||||||| ||| ||||||||||    
T  19285647 ggagcttcaaggcagaggatcttcatcctccgcttgttttct 19285688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 19542734 - 19542594
Alignment:
Q  77 atgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aagcttcaagtcagaggatc 175  Q
    |||||||||||||||| || | || ||||||||| | ||||||  |||| | | ||||||||||||||||||||||| | ||| || ||| ||||| |||    
T  19542734 atgcattataaatagagacacatgaacactctttcattcattctgaaagcttgaggtacaaggcaagggtcaagcattataagttttaaggcagagtatc 19542635  T
Q  176 ttcatcatcctcttgttttctctatgatatatttttctact 216  Q
    | |||| |||||||||| |||||| | ||||||||||||||    
T  19542634 tccatcctcctcttgttctctctagggtatatttttctact 19542594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 2729196 - 2729089
Alignment:
Q  114 tcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttct 213  Q
    ||||||| |||| ||| ||| ||||| ||||||||||||||| || |  ||| |||| | |||||||| || ||||||| |||||||| |||||||||||    
T  2729196 tcattcagaaagctagaggttcaaggtaagggtcaagcatcagagttcaaaggcagatggtcttcatcctcatcttgttctctctatggtatatttttct 2729097  T
Q  214 actgtttt 221  Q
    ||||||||    
T  2729096 actgtttt 2729089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 20892123 - 20892213
Alignment:
Q  66 cctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaa 156  Q
    |||||||||| ||||| |||||||||  |  |||||||||| ||||||  ||||| |||| ||| ||||||||||||||||||||||||||    
T  20892123 cctaagcaatcatgcactataaatagtgaatcttgcacactattttaactattcataaagctagcggtacaaggcaagggtcaagcatcaa 20892213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 26387464 - 26387347
Alignment:
Q  59 cttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattca-aaaagttagtggtacaaggcaagggtcaagcatcaa- 156  Q
    ||||||||| ||| |||||||||||||||||| ||| |||| | |||||||| | ||||||| ||||| || || |||| |||||||||| || |||||     
T  26387464 cttaacccccaagtaatgatgcattataaatatatatccttactcactctttcattcattcagaaaagctactgatacatggcaagggtcgagaatcaag 26387365  T
Q  157 agcttcaagtcagaggat 174  Q
    ||||||||| ||||||||    
T  26387364 agcttcaaggcagaggat 26387347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 10342198 - 10342366
Alignment:
Q  47 tagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt 146  Q
    ||||||||||||||||| ||||||| ||| ||  | |||||||| | || ||||||||   | ||| | ||||| |||||||||||| ||| || |||||    
T  10342198 tagttttcttctcttaaaccctaagtaatcatttactataaatatagactcttgcacatattattattaattcagaaagttagtggttcaaagcgagggt 10342297  T
Q  147 caagcatcaaagctt-caagtcagaggatcttcatcatcctcttgttttctctatgatatatttttcta 214  Q
    ||| ||||| || || |||| |||| ||| | |||| |||||||||| |||||| | ||||||||||||    
T  10342298 caaacatcagagttttcaaggcagatgatttccatcctcctcttgttctctctagggtatatttttcta 10342366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 22992353 - 22992210
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc-a 148  Q
    ||||||||||| |||||||| | ||||||||| |||||||||| || ||| |||||||||||  | ||| | |||  |||  |||||||||| ||||| |    
T  22992353 ttttcttctctaaacccctacgtaatgatgcactataaatagagactcttccacactcttttgttgatttagaaacgtagcagtacaaggcaggggtcaa 22992254  T
Q  149 agcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    | ||||| |||||||||  |||||||||  ||| ||||||||||    
T  22992253 accatcatagcttcaaggtagaggatctctatcctcctcttgtt 22992210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 18474678 - 18474827
Alignment:
Q  80 cattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aagcttcaagtcagaggatcttc 178  Q
    ||||||||||||| ||   || ||||||||| | ||||||  |||| ||| |||||||||||||||||||||||||  || |||||| ||||| |||| |    
T  18474678 cattataaatagagacaaatgaacactctttcattcattctgaaagctagaggtacaaggcaagggtcaagcatcaggagtttcaaggcagagtatctcc 18474777  T
Q  179 atcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||| ||||||| || |||| | | | |||||||||| || ||| ||||||    
T  18474778 atcctcctcttattctctccagggtttatttttctattggtttgtaatga 18474827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 26419217 - 26419373
Alignment:
Q  71 gcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcaga 170  Q
    ||||||||||| |||||||||| ||||||  ||||| || || ||||||| |||| ||| |||||| |  | || ||| |||||| |||||||||  | |    
T  26419217 gcaatgatgcactataaatagagacccttttacactattatattcattcagaaagatagcggtacatga-atggttcaggcatcagagcttcaaggtaaa 26419315  T
Q  171 ggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||||||||  |||||||||||||  || | ||| |||||||| |||||| ||||||    
T  26419316 ggatcttcattctcctcttgttttcattagggtatgtttttctattgttttgtaatga 26419373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 16970892 - 16971000
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||| ||||||| ||| ||    |||||||||| |||||| ||||| |||||| ||| |||||||  ||  ||| |||||||||| ||||    
T  16970892 ttttcttctcttaaaccctaagtaatcatatgctataaatagagacccttacacacacttttattcaatcaaaaacgtaacggttcaaggcaaggatcaa 16970991  T
Q  150 gcatcaaag 158  Q
    |||||||||    
T  16970992 gcatcaaag 16971000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 19218864 - 19218714
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    |||||||||||||||| || |||| ||| ||    |||||||||| ||||||| ||||  | ||| ||||| | |||| ||  ||| |||| ||||||||    
T  19218864 agttttcttctcttaaaccttaagtaatcatattctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaagacaagggtc 19218765  T
Q  148 aagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    |||||||| || |||||| ||||| |||| |||| |||||||||| ||||||    
T  19218764 aagcatcagag-ttcaaggcagagtatctccatcctcctcttgttctctcta 19218714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 23907950 - 23907894
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactctttta 112  Q
    ||||||||||  |||||||||||||| |||||||||| ||||||||| || ||||||    
T  23907950 tctcttaacctataagcaatgatgcagtataaatagagacccttgcatacactttta 23907894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 22991138 - 22991076
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactctttta 112  Q
    |||| ||||| |||||| |||| ||||||||| ||||||| || ||| |||||||||||||||    
T  22991138 tttttttctcgtaacccataagtaatgatgcactataaatcgagaccattgcacactctttta 22991076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 8401966 - 8401897
Alignment:
Q  157 agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaat 226  Q
    ||||||| | ||||||||||||||| |||||||||| |||||| | ||| ||||| || |||||| ||||    
T  8401966 agcttcatggcagaggatcttcatcctcctcttgttatctctagggtatgtttttatattgttttgtaat 8401897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 18819125 - 18819303
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    ||||||||||||||| |||||| ||||||| |||||||||||| ||||||||| ||||||||| | ||||| |||| ||  |||||||||||| ||||||    
T  18819125 ttttcttctcttaactcctaagtaatgatgtattataaatagagacccttgcaaactcttttatttattcagaaagctaacggtacaaggcaatggtcaa 18819224  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     |||||||||||| || ||||||||||  ||| |||||||||| |  ||| | ||| |||||||| |||||| ||||||    
T  18819225 acatcaaagcttccagacagaggatctctatcctcctcttgttcttactagggtatgtttttctattgttttgtaatga 18819303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 21844493 - 21844367
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    |||||||||||||||| ||||||| ||| || || |||||||||| |||| ||||||| |||||| | |||||  ||| ||| ||| ||||||| |||||    
T  21844493 agttttcttctcttaaaccctaagtaataattcaatataaatagaaacccctgcacacacttttatttattcagtaagctagcggttcaaggcatgggtc 21844394  T
Q  148 aagcatcaaagcttcaagtcagaggat 174  Q
    |||||||| ||||||||| ||||||||    
T  21844393 aagcatcagagcttcaaggcagaggat 21844367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 17884200 - 17884055
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatca 182  Q
    |||||||||| ||| |||||||  |||||| ||||| | |||| |||| |||||||||||||||||||||||| || |||||| |||||||| |   |||    
T  17884200 tataaatagagaccattgcacatacttttattcatttagaaagctagtagtacaaggcaagggtcaagcatcagagattcaaggcagaggatttctgtca 17884101  T
Q  183 tcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    |||||||||  | |||| | ||| |||||||| |||||| ||||||    
T  17884100 tcctcttgtcctttctagggtatgtttttctattgttttgtaatga 17884055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 21842866 - 21842744
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    |||||||||||||||| ||||||| ||| || || |||||| ||| ||||||||| || |||||| | ||||| |||| ||| ||| ||||||| || ||    
T  21842866 agttttcttctcttaaaccctaagtaataattcaatataaacagaaacccttgcatacacttttatttattcagaaagctagaggttcaaggcatggttc 21842767  T
Q  148 aagcatcaaagcttcaagtcaga 170  Q
    |||||||| ||||||||| ||||    
T  21842766 aagcatcagagcttcaaggcaga 21842744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 31262403 - 31262520
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    ||||||||| ||||| |||||||| ||||||||| |||||||||| || |||| ||||||||||| ||||| | |||  ||  ||||||||||||  |||    
T  31262403 agttttcttttcttatcccctaagtaatgatgcactataaatagagacacttgtacactcttttattcatttagaaatctaacggtacaaggcaatagtc 31262502  T
Q  148 aagcatcaaagcttcaag 165  Q
    ||| |||||| |||||||    
T  31262503 aagtatcaaaacttcaag 31262520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 21504249 - 21504105
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    ||||||||||||||||  || ||| ||| ||   |||||||||||||||||| ||||| |||||| ||||| | |||| || |||| ||||| || ||||    
T  21504249 agttttcttctcttaaatccgaagtaatcataggttataaatagatacccttacacacacttttattcatttagaaagctaatggttcaaggaaaaggtc 21504150  T
Q  148 aagcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    ||||||||||| | ||||  ||| |||||||||| |||| |||||    
T  21504149 aagcatcaaagttccaaggtagatgatcttcatcctcctattgtt 21504105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 27917655 - 27917587
Alignment:
Q  87 aatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||| ||||||||||||| ||||| ||||||| |||| ||| |||||||||||||||||||||||||    
T  27917655 aatagagacccttgcacactattttattcattcagaaagctagcggtacaaggcaagggtcaagcatca 27917587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 15454172 - 15454010
Alignment:
Q  47 tagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt 146  Q
    |||||||| |||||||| ||||||| ||||||| | ||||||| || |||||||||||| | |||| ||||| | |||  ||| |||||||| ||| |||    
T  15454172 tagttttcatctcttaaaccctaagtaatgatgaactataaatcgagacccttgcacacac-tttattcatttagaaacctaggggtacaagacaatggt 15454074  T
Q  147 caagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatattttt 211  Q
    |||| ||||||  |||||| || ||| | ||| || |||||||||| |||||| | |||||||||    
T  15454073 caagaatcaaactttcaaggcatagggttttc-tcctcctcttgttctctctaggttatattttt 15454010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 17862842 - 17862953
Alignment:
Q  58 tcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaa 157  Q
    |||||| || |||| ||||||||| |||||||| | ||  |||||||| |||||| ||||||| || |||||||||||||||||||||||| |||| | |    
T  17862842 tcttaaaccttaagtaatgatgcactataaatatagacttttgcacacacttttattcattcagaa-gttagtggtacaaggcaagggtcaggcattaga 17862940  T
Q  158 gcttcaagtcaga 170  Q
    | |||||| ||||    
T  17862941 ggttcaaggcaga 17862953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 18235987 - 18235809
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcatt------------caaaaagttagtggtacaaggcaag 143  Q
    |||||||||||||||| |||||||||||||| ||||| || |||| |||| |||||| |||||            || |||| ||| ||||||||| |||    
T  18235987 tctcttaacccctaagtaatgatgcattatagatagagactcttgtacacacttttattcatttagaaaagcatacagaaagctagcggtacaaggtaag 18235888  T
Q  144 ggtcaagcatcaa-agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    ||||||||||||| || || |||  ||||||||| |||| || |||| || |||||||| ||| |||||||| ||||||    
T  18235887 ggtcaagcatcaagagatttaaggaagaggatctccatcctcttcttattctctctatggtatgtttttctattgtttt 18235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 39732119 - 39732196
Alignment:
Q  66 cctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaag 143  Q
    |||||| ||||||||| |||||||||| || ||| ||||| |||||| ||||||| |||| ||| |||||||||||||    
T  39732119 cctaagtaatgatgcactataaatagagactctttcacacacttttattcattcagaaagctagcggtacaaggcaag 39732196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 31274296 - 31274366
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaa 121  Q
    |||||||||||||||| | |||   ||||||||| |||||||||| |||||||||| |||||||| ||||||||    
T  31274296 agttttcttctcttaatctcta---aatgatgcactataaatagagacccttgcactctcttttattcattcaa 31274366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 24188464 - 24188585
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    ||||||||||||| || ||| || ||  ||||||||| ||||||||| ||| ||     ||||||||||| ||| |||||||||||||||||||| || |    
T  24188464 tctcttaacccctgagtaatcatacacaataaatagagacccttgcatactatt-----cattcaaaaagctagcggtacaaggcaagggtcaaggatta 24188558  T
Q  156 a-agcttcaagtcagaggatcttcatc 181  Q
    | ||||||| |  ||||||||||||||    
T  24188559 agagcttcacggaagaggatcttcatc 24188585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 25460377 - 25460477
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtgg-tacaaggcaagggtcaagcatc 154  Q
    |||||||| ||||||| ||| || || |||||||||| ||| || |||| ||||||| | ||||| |||| || ||| ||||||||||||||||| ||||    
T  25460377 tctcttaatccctaagtaatcatacactataaatagagaccttttcacaatcttttatttattcagaaagctaatgggtacaaggcaagggtcaaacatc 25460476  T
Q  155 a 155  Q
    |    
T  25460477 a 25460477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 22262820 - 22263003
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    |||||||||||| | |||| ||||||| |||||||||  ||||||||| || ||||||||| |||||| ||||| | |||| ||| ||| ||||||||||    
T  22262820 cctagttttctttttttaaaccctaagtaatgatgcaccataaatagagactcttgcacacacttttattcattgagaaagctagcggttcaaggcaagg 22262919  T
Q  145 gtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||||||||| |||||||||  ||||||||  |||| || |||| |||||||||   ||| |||||||| |||||| ||||||    
T  22262920 gtcaagcatcatagcttcaaggtagaggatcgccatcctcttcttattttctctaatgtatgtttttctattgttttgtaatga 22263003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 9396273 - 9396133
Alignment:
Q  47 tagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt 146  Q
    ||||| || |||||||| || |||| ||||||||| |||||||| | || | ||||||| || ||| |||||||||||| ||||||||||||||||||||    
T  9396273 tagttctcatctcttaaaccttaagaaatgatgcactataaatatagactcgtgcacacactcttattcattcaaaaagatagtggtacaaggcaagggt 9396174  T
Q  147 caagcatcaaagcttcaagtcagaggatcttcatcatcctc 187  Q
    ||||||| | |||||||||  ||||||| ||| || |||||    
T  9396173 caagcattagagcttcaaggtagaggattttcctcctcctc 9396133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 12972022 - 12971874
Alignment:
Q  48 agttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtc 147  Q
    |||||||||| ||||||||||| | ||||||||| |||||||||| ||||||||| ||||||||| ||||| | |||||||  | |||||| || |||||    
T  12972022 agttttcttcccttaacccctacgtaatgatgcactataaatagagacccttgcagactcttttattcattaataaagttaacgatacaagtcatgggtc 12971923  T
Q  148 aagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatg 201  Q
    ||| ||     ||||||   ||| |||||||||| |||||||||| ||||||||    
T  12971922 aagtat-----cttcaaagaagacgatcttcatcctcctcttgttctctctatg 12971874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17198480 - 17198379
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    |||| |||||||||||||||||||||| ||||||| ||| |||||||| ||||||||| ||||||||| ||||| | |||  ||| | ||||||||||||    
T  17198480 cctatttttcttctcttaacccctaagtaatgatgtattctaaatagagacccttgcatactcttttattcatttataaaactagcgatacaaggcaagg 17198381  T
Q  145 gt 146  Q
    ||    
T  17198380 gt 17198379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 32930140 - 32930026
Alignment:
Q  49 gttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtca 148  Q
    |||||||||||||||  |||||| |||||| ||||||||||||| || |||||| || |||||| ||||||| |||| ||| |||||||| ||| | |||    
T  32930140 gttttcttctcttaattcctaagtaatgatccattataaatagagactcttgcatacacttttattcattcagaaagctagcggtacaagacaatgatca 32930041  T
Q  149 agcatcaaagcttca 163  Q
    ||||| | |||||||    
T  32930040 agcatgagagcttca 32930026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 13830542 - 13830426
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatca 182  Q
    |||||||| | |||||||||||| |||||| ||||||| |||||| |||||| |||||||||||||| ||| | || | ||||  || |||||| ||||     
T  13830542 tataaataaagacccttgcacacacttttattcattcataaagtttgtggtataaggcaagggtcaaacattagagttccaaggaaggggatctccatcc 13830443  T
Q  183 tcctcttgttttctcta 199  Q
    |||||||||| ||||||    
T  13830442 tcctcttgttctctcta 13830426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 1558394 - 1558327
Alignment:
Q  161 tcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||||| | |||| ||||||    
T  1558394 tcaaggcagaggatcttcatcatcctcttgttatctctaggatatatttttctattattttgtaatga 1558327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 26499526 - 26499374
Alignment:
Q  45 cctagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagg 144  Q
    ||||||||||||||||||| || |||   |||||| |||||||||||  |||||||| | ||||| |  ||||||| |||| ||| || |||||||||||    
T  26499526 cctagttttcttctcttaatccttaaattatgatgtattataaatagcgacccttgctctctcttat--tcattcagaaagctagaggcacaaggcaagg 26499429  T
Q  145 gtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    || |||||||| | |||||||  | | ||||| |||| |||||||||| ||||||    
T  26499428 gttaagcatcagatcttcaaggaaaatgatctccatcctcctcttgttctctcta 26499374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 16175020 - 16174843
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||||||||||| ||||||||  |||||||||||| |||| || ||||||||| || |||| |||| ||  |||| |||  || | ||||    
T  16175020 ttttcttctcttaacccctaagtaatgatgcggtataaatagata-ccttccagactcttttattcgttcataaagctaacggtaaaagaaaatgatcaa 16174922  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     ||| | ||||||| |  ||||||| |||| | || ||||||| |||||| | |||||||||||| | |||| ||||||    
T  16174921 acattagagcttcacggtagaggatgttcaccctcttcttgttctctctacggtatatttttctattattttataatga 16174843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 16528130 - 16528268
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatca 182  Q
    |||||||||| ||| ||||||||  | ||| ||||| | |||| |||| || ||||| |||||||||||||   || | |||| |||||||||||||||     
T  16528130 tataaatagagaccattgcacacattattattcatttagaaagctagttgttcaaggaaagggtcaagcattggagttccaaggcagaggatcttcatcc 16528229  T
Q  183 tcctcttgttttctctatgatatatttttctactgtttt 221  Q
    |||||||||| |||||| | ||| ||||| || ||||||    
T  16528230 tcctcttgttctctctagggtatgtttttgtattgtttt 16528268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 15382214 - 15382270
Alignment:
Q  134 acaaggcaagggtcaagcatcaa-agcttcaagtcagaggatcttcatcatcctctt 189  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  15382214 acaaggcaagggtcaagcatcaagagcttcaaggcagacgatcttcatcctcctctt 15382270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 11317 - 11164
Alignment:
Q  68 taagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtc 167  Q
    |||| ||||||| | |||||||||| || |||||||||| ||||| |||||||||||| | || ||||||||||||||| |||| ||| ||||||||| |    
T  11317 taagtaatgatgtactataaatagagacacttgcacacttttttattcattcaaaaagcttgtagtacaaggcaagggttaagcttcagagcttcaaggc 11218  T
Q  168 agaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    ||| ||| |||||| ||||| |||| |||||| | |||||||||||| ||||||    
T  11217 agatgattttcatcctcctcatgttctctctaaggtatatttttctattgtttt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 21549102 - 21549273
Alignment:
Q  58 tcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-a 156  Q
    |||||||||  ||| ||| ||||| |||||||| | ||||||||||||||||||| |||||||||||  |||  ||||||| ||| ||||||||||||      
T  21549102 tcttaacccaaaagtaatcatgcaatataaataaagacccttgcacactcttttattcattcaaaaatctagcagtacaagtcaatggtcaagcatcagg 21549201  T
Q  157 agcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    | ||||||| |||||||||| |||| |||||||||| |||||| | ||| |||||||| |||||| ||||||    
T  21549202 atcttcaaggcagaggatctccatcctcctcttgttctctctagggtatgtttttctattgttttgtaatga 21549273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 27460549 - 27460418
Alignment:
Q  47 tagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt 146  Q
    ||||||||||||||||||||||||| |||||| || |||||||||| |||||| |||||||||||| || |||| |||  ||| ||||||   ||||| |    
T  27460549 tagttttcttctcttaacccctaagtaatgatccactataaatagagacccttacacactcttttattctttcagaaaactagcggtacattacaaggat 27460450  T
Q  147 caagcatcaaagcttcaagtcagaggatcttc 178  Q
    ||||||||||||||||||  ||||||||||||    
T  27460449 caagcatcaaagcttcaatgcagaggatcttc 27460418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 25126898 - 25126997
Alignment:
Q  54 cttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcat 153  Q
    |||||||||||||| ||| | ||||| |||||||||||| | ||||| ||||| ||||| |||||||||||| |||  ||||||||||||||||||||||    
T  25126898 cttctcttaaccccaaagtagtgatgtattataaatagagatccttgaacacttttttattcattcaaaaagctagcagtacaaggcaagggtcaagcat 25126997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 15298540 - 15298362
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||||||||||| ||||||| ||||||||| || ||| || |||||| |||||  |||| | |||| ||| ||||||| ||||  |||||    
T  15298540 ttttcttctcttaacccctaagtaatgatgtattataaattgagacctttccacactattttatccattaagaaagctagcggtacaacgcaattgtcaa 15298441  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     ||||| || | |||| |||||||| |||| | |||||||||| |||||| | |||  ||||||  |||||| ||||||    
T  15298440 acatcagagttccaaggcagaggatattcaccctcctcttgttctctctagggtatgcttttcttttgttttgtaatga 15298362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 31314004 - 31314161
Alignment:
Q  63 acccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttc 162  Q
    |||| |||||||||||||| |||||||||| | | |||  |||||||||| | ||||| |||| ||| |||||||||  |||||||| ||||| |||| |    
T  31314004 acccttaagcaatgatgcactataaatagagatcattgttcactcttttatttattcagaaagctagcggtacaaggttagggtcaaccatcagagctgc 31314103  T
Q  163 aagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttt 220  Q
    ||| |||||||||| ||||  | ||||||| |||||||| | | |||||||| |||||    
T  31314104 aaggcagaggatctccatccccatcttgttctctctatggtttgtttttctattgttt 31314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 14745028 - 14744936
Alignment:
Q  136 aaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    |||||||||||||||||||  ||||||||| |||| ||||| |||| || ||||||| |||||||||||| |||||||| |||||| ||||||    
T  14745028 aaggcaagggtcaagcatctgagcttcaagacagatgatctgcatcctcttcttgttctctctatgatatgtttttctattgttttgtaatga 14744936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 25778181 - 25778360
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    ||||| ||| ||||| | |||| ||| ||||| |||||||||| ||| ||||||||||||||| ||||| | |||| ||   ||||||||||||||||||    
T  25778181 ttttcctctattaactcttaagtaataatgcactataaatagagacctttgcacactcttttattcatttataaagataacagtacaaggcaagggtcaa 25778280  T
Q  150 gcatc-aaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     ||||   |||||||||  |||| |||| |||| |||||| ||| |||||| | ||| |||||||| |||||| ||||||    
T  25778281 acatctggagcttcaaggaagagcatctccatcctcctctcgttctctctagggtatgtttttctattgttttgtaatga 25778360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 52270892 - 52270712
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttg-------cacactcttttaatcattcaaaaagttagtggtacaaggcaagggtca 148  Q
    |||||||||||||||| ||| ||||| |||||||||| || |||        |||| ||||||| ||||||| |||| ||| ||||||||||||||| ||    
T  52270892 tctcttaacccctaagtaatcatgcaatataaatagagactcttcactgttacacaatcttttattcattcagaaagctagcggtacaaggcaagggcca 52270793  T
Q  149 agcatca-aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgat-atatttttctactgttttctaatga 228  Q
    |||||||  ||||||| | || |||||||||||| |||||||||| |||||| ||| || |||||||| |||||| ||||||    
T  52270792 agcatcaggagcttcacggcaaaggatcttcatcctcctcttgttctctcta-gatgatgtttttctattgttttgtaatga 52270712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 25665422 - 25665296
Alignment:
Q  85 taaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aagcttcaagtcagaggatcttcatcat 183  Q
    |||||||| ||||||||||| | ||| | ||||||| |||| |||  ||||||| ||||||||||||||||  ||||||||| |||| ||||| |||| |    
T  25665422 taaatagagacccttgcacaatttttaattcattcataaagctagcagtacaagacaagggtcaagcatcatgagcttcaaggcagatgatctccatcct 25665323  T
Q  184 cctcttgttttctctatgatatatttt 210  Q
    ||||||||| |||||| ||||| ||||    
T  25665322 cctcttgttctctctaggatatgtttt 25665296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 23223857 - 23224000
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatca 182  Q
    |||||||| | |||||||||||   | ||| ||||||| |||| ||||| | || || ||||||||||||||| || | |||| |||||||||||||||     
T  23223857 tataaataaagacccttgcacatattcttattcattcagaaagctagtgattcacggaaagggtcaagcatcagagttccaaggcagaggatcttcatcc 23223956  T
Q  183 tcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    |||||| |  ||||||| | ||| |||||||| |||||| ||||||    
T  23223957 tcctctag--ttctctagggtatgtttttctattgttttgtaatga 23224000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 25730937 - 25731094
Alignment:
Q  65 ccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aagcttca 163  Q
    ||||||| ||| ||||| |||||||||| ||| ||||| ||||||||| ||||| | |||| ||   ||||||||||||||| || |||||  ||||| |    
T  25730937 ccctaagtaataatgcactataaatagagacctttgcatactcttttattcatttataaagataacagtacaaggcaagggtaaaacatcaggagcttaa 25731036  T
Q  164 agtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    ||  |||||||||||||| |||||  ||| |||||| | ||| ||||| || ||||||    
T  25731037 aggaagaggatcttcatcctcctcccgttctctctagggtatgtttttatattgtttt 25731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 11984841 - 11984726
Alignment:
Q  97 cttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttct 196  Q
    |||||||||  | ||| ||||||| |||| ||  ||| ||||||||  ||||||||||| || | |||| |||||||||| |||| |||||||||| |||    
T  11984841 cttgcacacattcttattcattcagaaagctaacggtgcaaggcaaatgtcaagcatcagag-tccaaggcagaggatctccatcctcctcttgttctct 11984743  T
Q  197 ctatgatatatttttct 213  Q
    ||| |||||||||||||    
T  11984742 ctaagatatatttttct 11984726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 34533169 - 34533247
Alignment:
Q  143 gggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    ||||||||||||| || ||||||  |||||||||||||| |||||||||| |||||| | ||| |||||| | ||||||    
T  34533169 gggtcaagcatcatagtttcaaggaagaggatcttcatcctcctcttgttctctctagggtatgtttttcgattgtttt 34533247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 23421207 - 23421139
Alignment:
Q  131 ggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    ||||||||||| |||||||||| || || |||||| |||||||||| |||| |||| ||||| ||||||    
T  23421207 ggtacaaggcaggggtcaagcaccacagtttcaaggcagaggatctacatcttcctattgttctctcta 23421139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 34934968 - 34934862
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||||||   |||| ||||||||||||||||||||  |||||  |||  |||||| |||||| |||||||||||||| || |||||||| ||    
T  34934968 ttttcttctcttaacta-taagtaatgatgcattataaataga-gcccttttaca--cttttattcattc-aaaagttagtggtataatgcaagggttaa 34934874  T
Q  150 gcatcaaagctt 161  Q
     |||||||||||    
T  34934873 acatcaaagctt 34934862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 25726333 - 25726190
Alignment:
Q  49 gttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtca 148  Q
    ||||||||||||||| ||||||| ||| ||   ||||||| | | ||| || |||||  | ||| ||||||| |||| ||| ||| ||||  | ||||||    
T  25726333 gttttcttctcttaaaccctaagtaatcatatgttataaacaaagacctttacacacattattattcattcagaaagctagcggttcaagataggggtca 25726234  T
Q  149 agcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    |||||||||| | |||| || ||||||| |||| ||||||||||    
T  25726233 agcatcaaagttccaaggcaaaggatctccatcctcctcttgtt 25726190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 25734741 - 25734598
Alignment:
Q  49 gttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtca 148  Q
    ||||||||||||||| ||||||| ||| ||   ||||||| | | ||| || |||||  | ||| ||||||| |||| ||| ||| ||||  | ||||||    
T  25734741 gttttcttctcttaaaccctaagtaatcatatgttataaacaaagacctttacacacattattattcattcagaaagctagcggttcaagataggggtca 25734642  T
Q  149 agcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    |||||||||| | |||| || ||||||| |||| ||||||||||    
T  25734641 agcatcaaagttccaaggcaaaggatctccatcctcctcttgtt 25734598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 30850720 - 30850545
Alignment:
Q  51 tttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaag 150  Q
    |||| |||||||||||||||| ||||||  ||| |||||||| |||| |||| | ||||||| ||||||| |||| ||| |||||||||||||||||||     
T  30850720 tttcatctcttaacccctaagtaatgatt-attgtaaatagagacccatgcaaattcttttattcattcagaaagctagcggtacaaggcaagggtcaaa 30850622  T
Q  151 catcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatg 227  Q
    ||| | || || ||| |||||||||| |||| |||| ||||| |||||| | ||| |||||||| |||||| |||||    
T  30850621 cataagagatttaaggcagaggatctccatcctcctattgttctctctagggtatgtttttctattgttttgtaatg 30850545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 27085222 - 27085097
Alignment:
Q  66 cctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaag-ttagtggtacaaggcaagggtcaagcatcaaagcttcaa 164  Q
    |||||| | ||||| | |||||||||| |||| |||||||||||||| ||||| |||||| ||||  ||||||| |||||||||||||||||| ||||||    
T  27085222 cctaagtagtgatgtactataaatagagacccctgcacactcttttattcatttaaaaagcttag--gtacaagtcaagggtcaagcatcaaaacttcaa 27085125  T
Q  165 gtcagaggatcttcatcatcctcttgtt 192  Q
    | |||||||||| |||| ||||||||||    
T  27085124 gacagaggatctccatcctcctcttgtt 27085097  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 11437854 - 11437987
Alignment:
Q  60 ttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatca-aag 158  Q
    |||||||||||| |||||||||| ||||||| | ||| || |||||| ||||| ||||| | |||| |||| ||||||||||||||||||||||||  ||    
T  11437854 ttaacccctaagtaatgatgcatcataaatatagaccattacacactattttattcatttagaaagctagtagtacaaggcaagggtcaagcatcatgag 11437953  T
Q  159 cttcaagtcagaggatcttcatcatcctcttgtt 192  Q
    ||||||  |||||||||| |||| | ||||||||    
T  11437954 cttcaaagcagaggatctccatccttctcttgtt 11437987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 30544180 - 30544338
Alignment:
Q  56 tctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaa--gttagtggtacaaggcaagggtcaagcat 153  Q
    |||||||||||||||| ||| || || |||||||||| | | ||||||||||||||| ||||| | |||  | ||||||| ||||||||| ||||| ||     
T  30544180 tctcttaacccctaagtaatcatacactataaatagagatcattgcacactcttttattcatttagaaaaggctagtggttcaaggcaagagtcaaacaa 30544279  T
Q  154 caaa-gcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatattttt 211  Q
     |   |||||||| || |||||||||||| |||||||||||||| |||||||| |||||    
T  30544280 taggcgcttcaaggcataggatcttcatcctcctcttgttttctttatgatattttttt 30544338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 24927519 - 24927346
Alignment:
Q  55 ttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatc 154  Q
    ||||||||||||||||| ||| ||  | |||||||||| |||||||||||   ||||| ||||||| | |||||||||| ||||||||  ||||| || |    
T  24927519 ttctcttaacccctaagtaatcatctaatataaatagagacccttgcaca-aattttattcattcatatagttagtggtccaaggcaaatgtcaaacacc 24927421  T
Q  155 a-aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
    |  |||||||||   ||||||||||||| ||| |||||| ||| || | ||| |||||||| |||||| ||||||    
T  24927420 aggagcttcaaggtggaggatcttcatcctccccttgttctctttagggtatgtttttctattgttttgtaatga 24927346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 28074935 - 28075077
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||| |||| |||||||||||| ||| ||||| |||||||||| ||| ||| ||||| ||||| ||||||| || | |||  ||| ||| ||||||||||    
T  28074935 tttttttctattaacccctaagtaattatgcactataaatagagacctttgtacactattttattcattcagaaggctagcagtataagacaagggtcaa 28075034  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgtt 192  Q
     ||||| | ||| | | ||||||||||  ||| ||||||||||    
T  28075035 acatcataactttatggcagaggatctctatcctcctcttgtt 28075077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 12774525 - 12774354
Alignment:
Q  58 tcttaacccctaagcaatgatgcattataaatagatacccttgcacactctttt--aatcattcaaaaagttagtggtacaaggcaagggtcaagcatca 155  Q
    |||||| ||||||| || |||||| |||||||||| | |||||||||| |||||  | | ||||| || || ||||||||||| |||||||||| |||||    
T  12774525 tcttaaaccctaagtaacgatgcactataaatagacagccttgcacacacttttttatttattcagaaggt-agtggtacaagacaagggtcaaacatca 12774427  T
Q  156 aagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgttttctaatga 228  Q
     | ||||||| |||| ||| ||| |  | |||||||| ||||||   ||| |||||||| |||||| ||||||    
T  12774426 gaacttcaaggcagaagattttccttctactcttgttctctctagattatgtttttctattgttttgtaatga 12774354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 13583224 - 13583142
Alignment:
Q  108 ttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaa-agcttcaagtcagaggatcttcatcatcctctt 189  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||| |||||| ||||||||| | |||||||| || || ||||||    
T  13583224 ttttattcattcataaagctagaggtacaaggcaagggtcaaccatcaagagcttcaaggcggaggatctccaccaccctctt 13583142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 24094676 - 24094751
Alignment:
Q  122 aaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    |||||||||||| ||||||||||||||| |||||||| |||||| ||||  ||||  ||| |||||||||||| ||||    
T  24094676 aaagttagtggttcaaggcaagggtcaaacatcaaagtttcaaggcaga--atctctatcctcctcttgttttgtcta 24094751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 5569842 - 5569737
Alignment:
Q  47 tagttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt 146  Q
    ||||||| ||||||||| ||||||| ||| ||   ||||||||||| |||||| ||||| |||||| ||||||| |||  ||  ||| |||||||||| |    
T  5569842 tagtttttttctcttaaaccctaagtaatcatttgttataaatagagaccctt-cacacacttttattcattcagaaaactaacggttcaaggcaaggat 5569744  T
Q  147 caagcat 153  Q
    |||||||    
T  5569743 caagcat 5569737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 6887872 - 6887743
Alignment:
Q  51 tttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaag 150  Q
    ||||||||||||||| ||||| ||||||||| |||||||||| | ||||||| |   ||||| | ||  | |||| | | |||||||| |||| ||||||    
T  6887872 tttcttctcttaacctctaagtaatgatgcactataaatagaga-ccttgcagaaatttttattgatatagaaagcttgcggtacaagacaagagtcaag 6887774  T
Q  151 catcaaagcttcaagtcagaggatcttcatc 181  Q
    ||||| ||||| |||   |||||||||||||    
T  6887773 catcatagcttaaaggttgaggatcttcatc 6887743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 11396 - 11258
Alignment:
Q  83 tataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatca 182  Q
    |||||||||| |||||||||||   ||||| ||||||| |||| ||  | |||||||||||||||||||||||||| | ||||  ||||||| | ||||     
T  11396 tataaatagagacccttgcacatatttttattcattcagaaagctaacgttacaaggcaagggtcaagcatcaaagttccaaggtagaggatatccatcc 11297  T
Q  183 tcctcttgttttctctatgatatatttttctactgtttt 221  Q
    |||||||||| ||||||   ||| |||||||| ||||||    
T  11296 tcctcttgttctctctagtgtatgtttttctattgtttt 11258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 8399 - 8228
Alignment:
Q  50 ttttcttctcttaacccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaa 149  Q
    |||||||||||| | ||||||| ||| ||    |||||||||| ||||||||| ||  ||||| ||||||| |||| || || ||||| |||||||||||    
T  8399 ttttcttctctttaaccctaagtaataatatgctataaatagagacccttgcagacatttttattcattcagaaagctaatgttacaacgcaagggtcaa 8300  T
Q  150 gcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    |||||| || | ||||  ||||||| | |||| |||||||||| ||||||   ||| |||||||| ||||||    
T  8299 gcatcagagttccaaggtagaggatatccatcctcctcttgttctctctagtgtatgtttttctattgtttt 8228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 12731 - 12874
Alignment:
Q  60 ttaacccctaa-gcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggt--caagcatca- 155  Q
    ||||||||||| | ||| ||||| |||||||||| ||||||||||||   |||| ||||||| |||| ||| ||||||||||||||||   ||||||||     
T  12731 ttaacccctaaagtaattatgcactataaatagagacccttgcacaccagtttattcattcagaaagctagcggtacaaggcaagggttcaaagcatcat 12830  T
Q  156 aagcttcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
      |||||||  |||||||||| |||| |||||||||| ||||||    
T  12831 cggcttcaaagcagaggatctccatcctcctcttgttctctcta 12874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 5316 - 5233
Alignment:
Q  135 caaggcaagggtcaagcatcaaagcttcaagtcagaggatcttcatcatcctcttgttttctctatgatatatttttctactgtttt 221  Q
    ||||||||||||||||||||| ||||||||| |  ||||| ||| |||| |||||||| |||||| ||||| |||||||| ||||||    
T  5316 caaggcaagggtcaagcatcagagcttcaaggc--aggat-ttcttcattctcttgttctctctaggatatgtttttctattgtttt 5233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 3603 - 3741
Alignment:
Q  64 cccctaagcaatgatgcattataaatagatacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaa-gggtca-agcatca-aagct 160  Q
    |||||||| ||| ||||| |||||||||| |||||||||||||  |||| ||||||| |||  ||| |||||| || || |||||| |||||||   |||    
T  3603 cccctaagtaattatgcactataaatagagacccttgcacactagtttattcattcataaaactagcggtacagggtaaggggtcagagcatcatcggct 3702  T
Q  161 tcaagtcagaggatcttcatcatcctcttgttttctcta 199  Q
    ||||  |||||||||| |||| |||||||||| ||||||    
T  3703 tcaaagcagaggatctccatcctcctcttgttctctcta 3741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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