View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_285 (Length: 227)
Name: NF6865A_low_285
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_285 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 37990989 - 37991181
Alignment:
| Q |
15 |
gacatcaaaattttaatgtcaaaaccatttttcataaaatacatcaatgtataagcagtaaaatgatgacatcattatttgttaagannnnnnnnnnnna |
114 |
Q |
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| T |
37990989 |
gacatcaaaattttaatgtcaaaaccatttttcataaaatacatcaatgtataagcagtaaaatgatgacatcattatttgttaaga--tttttttttta |
37991086 |
T |
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| Q |
115 |
aattctatcattatatatttcaaagcgttgaagacaaatcaatatctacatattacaattctcacgtgtcttcacgtattaatttgtttcttcat |
209 |
Q |
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| T |
37991087 |
aatactatcattatatatttcaaaacgttgaaggcaaatcaatatctacatattacaattctcacgtgtcttcacatattaatttgtttcttcat |
37991181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 39471529 - 39471343
Alignment:
| Q |
15 |
gacatcaaaattttaatgtcaaaa--ccatttttcataaaatacatcaatgtataagcagtaaaatgatgacatcattatttgttaagannnnnnnnnnn |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| || |
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| T |
39471529 |
gacatcaaaattttaatgtcaaaaaaccatttttcataaaatccatcaatgtataagcagtaaaatgatgacatcgttaattgtttag-caaacatttaa |
39471431 |
T |
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| Q |
113 |
naaattctatcattatatatttcaaagcgttgaagacaaatcaatatctacatattacaattctcacgtgtcttcacgtattaatttg |
200 |
Q |
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| T |
39471430 |
aaaattctatcattatatatttcaaaacgttgaaggaaaatcaatatctacatattacaattctaacgtgtcttcacatattaatttg |
39471343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 39471628 - 39471576
Alignment:
| Q |
15 |
gacatcaaaattttaatgtcaaa--accatttttcataaaatacatcaatgta |
65 |
Q |
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| T |
39471628 |
gacatcaaaatttcaatgtcaaaacaccatttttcatggaatacatcaatgta |
39471576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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