View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_286 (Length: 227)
Name: NF6865A_low_286
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_286 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 54912852 - 54913045
Alignment:
| Q |
30 |
taattattaattaacagacaaaaactgttgtattaataaaagcatgcaaaattgtatataagg-attaagaaaagaaacctcaggttattgacacgaaga |
128 |
Q |
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| T |
54912852 |
taattattaattaacagacaaaaactgttgtattaataaaagcatgcaaaattgtatataagggattaagaaaagaaacctcatgatattgacacgaaga |
54912951 |
T |
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| Q |
129 |
tgagctctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagtacaatacagtaaaccttgcaaaagggtgtt |
222 |
Q |
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| T |
54912952 |
tgagctctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagtacaatatagtaaaccttgcaaaagggtgtt |
54913045 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 11464684 - 11464742
Alignment:
| Q |
135 |
ctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagta |
193 |
Q |
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| T |
11464684 |
ctaagctcaatgaaaagctcatacatctgacccagatcagcagcgttgccatgagagta |
11464742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 7338061 - 7338093
Alignment:
| Q |
158 |
catctgacccaaatcagcagcattaccatgaga |
190 |
Q |
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| T |
7338061 |
catctgacccaaatcagcagcatttccatgaga |
7338093 |
T |
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