View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_287 (Length: 227)
Name: NF6865A_low_287
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_287 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6821671 - 6821443
Alignment:
| Q |
1 |
taatttgtgtgtgtaaggattgtgtctactgtttcttgcaaaatgttgtcttccacatctgtatgaaattggctatagtggtattctaagaagtattaaa |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6821671 |
taatttgtgagtgtaaggattgtgtctactgtttcttgcaaaatgttgtgttccgcttctgtatgaaattggctatagtggtattctaagaagtattaaa |
6821572 |
T |
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| Q |
101 |
aatgtcttagattttatat--atattttttaaataaatccactactatattgttgtcaagagtcatcaatctgtttgtttttctatacaaatgatgaggc |
198 |
Q |
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| T |
6821571 |
aatgtcttagattttatattatttttttttgaataaatccacttctatattgttgtcaagagtcatcaatctgtttgtttttctaagtaaatgatgaggc |
6821472 |
T |
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| Q |
199 |
ttaaaatagtttgatgatgagaataatga |
227 |
Q |
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| T |
6821471 |
ttaaaatagtttgatgatgagaataatga |
6821443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 7848666 - 7848448
Alignment:
| Q |
11 |
gtgtaaggattgtgtctactgtttcttgcaaaatgttgtcttccacatctgtatgaaattggctatagtggtattctaagaagtattaaaaatgtcttag |
110 |
Q |
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| T |
7848666 |
gtgtaaggattgtgtctactgttccttgtaaaatgttgtgttccacatctgtatgaaattggctatagtggtattctaagaaatattaaaaatgtcttag |
7848567 |
T |
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| Q |
111 |
attttatat--atattttttaaataaatccactactatattgttgtcaagagtcatcaatctgtttgtttttctatacaaatgatgaggcttaaaatagt |
208 |
Q |
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| T |
7848566 |
attttatatacatttttttttaataaatccacttctatattgttgtcaagagtcatcaatctgtttgtttttctatgcaaatgacgaggcttaaaatagt |
7848467 |
T |
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| Q |
209 |
ttgatgatgagaataatga |
227 |
Q |
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| T |
7848466 |
ttgatgatgagaataatga |
7848448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35922200 - 35922423
Alignment:
| Q |
1 |
taatttgtgtgtgtaaggattgtgtctactgtttcttgcaaaatgttgtcttccacatctgtatgaaattggctatagtggtattctaagaagtattaaa |
100 |
Q |
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||||||||| |||||||||||||||| |||||||| ||||| |||| || |||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
35922200 |
taatttgtgagtgtaaggattgtgtccgtggtttcttgtaaaatattgtgttggacatctgtatgaaattggttatggtggtattctaagaa---ttaaa |
35922296 |
T |
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| Q |
101 |
aatgtcttagattttatatatattttttaaataaatccactactatattgttgtcaagagtcatcaatctgtttgtttttctatacaaatgatgaggctt |
200 |
Q |
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||||||||||||||||||| | ||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
35922297 |
aatgtcttagattttatatctttttttcgaataaatccacttctatattgttgacaaaagtcatcaatctgtttgtttttctatgcaaatgacgaggctt |
35922396 |
T |
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| Q |
201 |
aaaatagtttgatgatgagaataatga |
227 |
Q |
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||||| ||||||||||| ||||||||| |
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| T |
35922397 |
aaaattgtttgatgatgtgaataatga |
35922423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 45564658 - 45564825
Alignment:
| Q |
20 |
ttgtgtctactgtttcttgcaaaatgttgtcttccacatctgtatgaaattggctatagtggtattctaagaagtattaaaaatgtcttagattttatat |
119 |
Q |
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||||||||||||||||||| |||||||| | || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
45564658 |
ttgtgtctactgtttcttgtaaaatgttttgttgtacatctgtatgaaattggctatagtggtgttctaagaagtattaaaaatgtcttcgatttta--- |
45564754 |
T |
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| Q |
120 |
atatttttta-aataaatccactactatattgttgtcaagagtcatcaatctgtttgtttttctatacaaa |
189 |
Q |
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|| ||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| |
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| T |
45564755 |
attttttttaggataaatccacttctatactgttgccaagagtcgtcaatctgtttgtttttctatgcaaa |
45564825 |
T |
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