View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_288 (Length: 226)
Name: NF6865A_low_288
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_288 |
 | |
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| [»] scaffold0023 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0081 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0304 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0323 (1 HSPs) |
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| [»] scaffold0270 (1 HSPs) |
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| [»] scaffold0101 (2 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold1701 (1 HSPs) |
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| [»] scaffold0239 (1 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 21890 - 21723
Alignment:
| Q |
15 |
gacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccg |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
21890 |
gacatcaaagaagctgaagataaaatctggaaatcccaggtaatcatctcatgccccaactcatcgcatgcatacctagggcctttgccaaatgaccccg |
21791 |
T |
|
| Q |
115 |
aagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||| || || |||||||||||| ||||||| |
|
|
| T |
21790 |
aagatctagaaaaactcaacgctgttttcccttgtaatgaggggcagttacctctcatttcttcaaaa |
21723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 84302 - 84138
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||| | || | |
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|
| T |
84302 |
atcaaagaagctgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgtatacctagggcctttgccggatgactctgacg |
84203 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| |||||| |||||| |||||||||||||||||| | |||| | || || ||||||||||| |
|
|
| T |
84202 |
atcaggaaaatctcaatactgttttcccttgtaatgaggaacaattgccccttgttttttcaaaa |
84138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 152263 - 152439
Alignment:
| Q |
15 |
gacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccg |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
152263 |
gacatcaaagaagctgaagatgaaatctggaaatcccaagtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccggatgactccg |
152362 |
T |
|
| Q |
115 |
aagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
|||||||||||||| | | | |||||||||||||||||| | ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
152363 |
aagatctggaaaaactaagtgctgttttcccttgtaatgaggcacagttacctctcattttttc-aaaaggtccttat |
152439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 389356 - 389180
Alignment:
| Q |
15 |
gacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccg |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
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|
| T |
389356 |
gacatcaaagaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggtctttgccggatgactccg |
389257 |
T |
|
| Q |
115 |
aagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
| |||||||||||| | ||| | |||||||||||||||| ||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
389256 |
acgatctggaaaaacttaatgctattttcccttgtaatgagggacagttacccctcattttttc-aaaaggtccttat |
389180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 116198 - 116340
Alignment:
| Q |
12 |
atggacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgacc |
111 |
Q |
| |
|
||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |
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|
| T |
116198 |
atggatatcaaagaaactgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcacatgcatacctagggcctttgccgaatgact |
116297 |
T |
|
| Q |
112 |
ccgaagatctggaaaaagtcaatattgttttcccttgtaatga |
154 |
Q |
| |
|
|| | |||| |||||| |||||| | |||||||||||||||| |
|
|
| T |
116298 |
ccaatgatcaggaaaatatcaatactattttcccttgtaatga |
116340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 30194 - 30371
Alignment:
| Q |
14 |
ggacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgacccc |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
30194 |
ggacatcaaagaagctgaagataaaatctggaaatcccaggtaattatctcctgcccaaactcatcgcatgcatacctagggcctttgccggatgactgc |
30293 |
T |
|
| Q |
114 |
gaagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||||||| | ||| | || ||||||||||| ||||||||||||| |
|
|
| T |
30294 |
gatgatctggaaaaactcaatgttgttttcccttgtaatgaggaacagtttcccctcattttttc-aaaaggtccttat |
30371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 28420 - 28244
Alignment:
| Q |
15 |
gacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccg |
114 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||| | | |
|
|
| T |
28420 |
gacatcaaagaaggtgaagataaaatctggaaatcccaggtaattatctcgtgtcccaactcatcgcatgcatacctagggcctttgtcgcatgactctg |
28321 |
T |
|
| Q |
115 |
aagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
| |||| ||||||| ||||| ||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
28320 |
acgatccggaaaaactcaatgttgttttcccttgtaatgagggacaattacccctcattttttc-aaaaggtccttat |
28244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 14715005 - 14715169
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| | | | |
|
|
| T |
14715005 |
atcaaagaagctgaagataaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactcaaacg |
14715104 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||| | |||| | || ||||||||||||||| |
|
|
| T |
14715105 |
atcaggaaaaactcaatattgttttcccttgtaatgaggaacaattgcccctcattttttcaaaa |
14715169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 13278099 - 13278249
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||| |||| || | ||| |
|
|
| T |
13278099 |
aagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactccgatgaccagga |
13278198 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgtaatgacggacaaatacctctcatttt |
175 |
Q |
| |
|
| || | |||| |||||| ||||||| || | |||| ||||||| ||||| |
|
|
| T |
13278199 |
agaactaaatactgtttttccttgtagcgaggaacaactacctcttatttt |
13278249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 14557756 - 14557865
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| || ||| |||| || |
|
|
| T |
14557756 |
tcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgtccaaactcatcgcatgcatacctagggcctttgccggacgactccgatga |
14557855 |
T |
|
| Q |
119 |
tctggaaaaa |
128 |
Q |
| |
|
||| |||||| |
|
|
| T |
14557856 |
tctcgaaaaa |
14557865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 21309953 - 21309787
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | || |
|
|
| T |
21309953 |
aagctgaagataaaatctagaaatcctaggtaatcatttcatgccctaactcatcgcatgcatacctagggcctttgccagatgatcccgaagacttaga |
21309854 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
21309853 |
aaaactcaacgttgttttcccttgtaatgagggacagttacctctcattttttc-aaaaggtccttat |
21309787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 22795350 - 22795514
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
22795350 |
atcaaagaagctgaagataaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgcaggatgactcaaaca |
22795449 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| | ||||| |||||| | |||||||||||||||| | |||||| || ||||||||||||||| |
|
|
| T |
22795450 |
atcagaaaaaactcaataatattttcccttgtaatgaggaacaaatgcccctcattttttcaaaa |
22795514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 22685587 - 22685762
Alignment:
| Q |
15 |
gacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccg |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||| ||||| || | |
|
|
| T |
22685587 |
gacatcaaggaagctgaagataaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctg |
22685686 |
T |
|
| Q |
115 |
aagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtcctta |
191 |
Q |
| |
|
|||| | |||||| |||| |||||| ||||||| ||| |||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
22685687 |
aagacttagaaaaattcaactctgtttttccttgtagtgagggacaattacccctcattttttc-aaaaggtcctta |
22685762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 22085656 - 22085555
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| || |
|
|
| T |
22085656 |
tcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgacga |
22085557 |
T |
|
| Q |
119 |
tc |
120 |
Q |
| |
|
|| |
|
|
| T |
22085556 |
tc |
22085555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 41369539 - 41369634
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatc |
120 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
41369539 |
aagctgaagacagaatctggaaatcccaggtaattattccatgctcaaactcatcgcatgcatacctagggcctttgccggatgactccgacgatc |
41369634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 4567474 - 4567371
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||| |||| ||| | |||||||||| ||||| || || |
|
|
| T |
4567474 |
aagctgaagataaaatctgaaaatcccaggtaattaactcatgccctaactcaccgcatgcatttttaggacctcttccagatgaccaagaagacctaga |
4567375 |
T |
|
| Q |
125 |
aaaa |
128 |
Q |
| |
|
|||| |
|
|
| T |
4567374 |
aaaa |
4567371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 119159 - 119328
Alignment:
| Q |
13 |
tggacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccc |
112 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
119159 |
tggatatcaaagaagctgaggataaaatctggaaatcccaggtaattatctcatgtccaaactcatcgcatgcatacctagggcctttgccggatgactc |
119258 |
T |
|
| Q |
113 |
cgaagatctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| |||| ||||||| |||||| |||||| ||||| ||||| | ||| |||| ||||||||||||||| |
|
|
| T |
119259 |
cgacgatcaggaaaaactcaatactgtttttccttgaaatgaggaacagttacccctcattttttcaaaa |
119328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24351 - 24187
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| ||| | |
|
|
| T |
24351 |
atcaaagaagctgaagacaaaatctggaaatcctaggtaattatctcatgtccaaattcatcgcatgcatacctagggcctttgccggatgactccggcg |
24252 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| |||||| |||||| |||||||||||||||||| | |||| | || || |||||||||||| |
|
|
| T |
24251 |
atcaggaaaatctcaatactgttttcccttgtaatgaggaacaattgccccttattttttcaaaa |
24187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 21529570 - 21529434
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| | || | |
|
|
| T |
21529570 |
atcaaagaaactgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactctgatg |
21529471 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatga |
154 |
Q |
| |
|
||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
21529470 |
atcaggaaaatctcaatgttgttttcccttgtaatga |
21529434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 45098 - 45233
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| | || || |
|
|
| T |
45098 |
tcaaagaagctgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactctgatga |
45197 |
T |
|
| Q |
119 |
tctggaaaaagtcaatattgttttcccttgtaatga |
154 |
Q |
| |
|
|| |||||| ||||| |||||||||||||||||| |
|
|
| T |
45198 |
tcaggaaaatctcaatgctgttttcccttgtaatga |
45233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 27619 - 27748
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||| | || |||| ||| |
|
|
| T |
27619 |
aagctgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgtcggatgactctgatgatcagga |
27718 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgtaatga |
154 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |
|
|
| T |
27719 |
aaatctcaatgttgttttcccttgtaatga |
27748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 19026254 - 19026418
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||| |||||| |||| | |
|
|
| T |
19026254 |
atcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctagggtctttgccggatgactccgatg |
19026353 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| ||||| | |||| ||||||||||||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
19026354 |
atcaagaaaatctaaatactgttttcccttgtaacgaggaacaattgcctctcattttctcaaaa |
19026418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 23495814 - 23495650
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||| | || | |
|
|
| T |
23495814 |
atcaaagaagatgaagacaaaatctggaaatcccaggtaatcatcttatgcccaaactcatcgcatgcatacctagggcctttgccggatgactctgatg |
23495715 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| ||||||| | | | |||||| ||||||| || | |||| ||||||||||||| |||||| |
|
|
| T |
23495714 |
atcaggaaaaactagacactgtttttccttgtagcgaggaacaactacctctcattttgtcaaaa |
23495650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 23612340 - 23612504
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
23612340 |
atcaaagaagctgaagacaaaatctggaaatcctaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatg |
23612439 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| ||||||| | || | |||||| ||||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
23612440 |
atcaggaaaaactaaacactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaa |
23612504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 22647815 - 22647651
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | |||||| |||| | |
|
|
| T |
22647815 |
atcaaagaagctgaagacaaaatatggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgtcggatgactccgatg |
22647716 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| ||||||| | || |||||||| |||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
22647715 |
atcaggaaaaactaaacattgtttttccttgtggcgaggaacaactgcctctcattttctcaaaa |
22647651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 23191423 - 23191533
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
23191423 |
atcaaagaagctgaagacaaaatctggaaatcctaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatg |
23191522 |
T |
|
| Q |
118 |
atctggaaaaa |
128 |
Q |
| |
|
||| ||||||| |
|
|
| T |
23191523 |
atcaggaaaaa |
23191533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 23617040 - 23617203
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
23617040 |
tcaaagaagctgaagacaaaatctggaaatcccaggtaatcatttcatgtccaaactcatcacatgcatacctagggcctttgccggatgactccgatga |
23617139 |
T |
|
| Q |
119 |
tctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
|| | ||||| | || | |||||| ||||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
23617140 |
tcagaaaaaactaaacactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaa |
23617203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 23615997 - 23616098
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
23615997 |
tcaaagaagctgaagacaaaatctggaaatcccaggtaatcatttcatgtccaaactcatcacatgcatacctagggcctttgccggatgactccgatga |
23616096 |
T |
|
| Q |
119 |
tc |
120 |
Q |
| |
|
|| |
|
|
| T |
23616097 |
tc |
23616098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 22334276 - 22334410
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| || ||| | || | |
|
|
| T |
22334276 |
atcaaagaagctgaagacaaaatctggaaatcccagataattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggacgactctgacg |
22334375 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaat |
152 |
Q |
| |
|
||| ||||||| | |||| |||||||||||||||| |
|
|
| T |
22334376 |
atcaggaaaaacttaatactgttttcccttgtaat |
22334410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 1734560 - 1734475
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgac |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1734560 |
aagctgaagacagaatctggaaatcccaggtaattattccatgctcaaactcatcgcatgcatacctagggcctttgccggatgac |
1734475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 30110 - 29946
Alignment:
| Q |
27 |
gctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctggaaa |
126 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||| |||||||| |||| |||||| ||| || | | |||| |
|
|
| T |
30110 |
gctgaagataaaatctagaaatcccaggtaatcatctcatgccccaactcatagtatgcataactagggcccttgcgagatgatccctaatacttagaaa |
30011 |
T |
|
| Q |
127 |
aagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
30010 |
aactcaacgctgttttcccttgtaatgagggacaattacctctcattttctc-aaaaggtccttat |
29946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 40589 - 40432
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||| |||| | | |
|
|
| T |
40589 |
aagctgaagacaaaatatggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactccgatgatcagaa |
40490 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
|||| | |||| |||||| ||||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
40489 |
aaaactaaatactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaa |
40432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 6651 - 6815
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | |||||| |||| | |
|
|
| T |
6651 |
atcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgtcggatgactccgatg |
6750 |
T |
|
| Q |
118 |
atctggaaaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
||| |||||| | || | | |||| ||||||| || | |||| ||||||||||||| |||||| |
|
|
| T |
6751 |
atcaagaaaaactaaaaactatttttccttgtagcgaggaacaactacctctcattttctcaaaa |
6815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 43473 - 43366
Alignment:
| Q |
13 |
tggacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccc |
112 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
43473 |
tggatatcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactc |
43374 |
T |
|
| Q |
113 |
cgaagatc |
120 |
Q |
| |
|
||| |||| |
|
|
| T |
43373 |
cgatgatc |
43366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 12022420 - 12022586
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||| | || |
|
|
| T |
12022420 |
aagcggaagataaaatctagaaatcccaggtaatcatctcatgccctaactcatcgcatgcatatctagggcctttgccagacgatcccgaagacttaga |
12022519 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaaaggtccttat |
192 |
Q |
| |
|
||| ||||| ||||||||||||| || ||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
12022520 |
taaactcaatgatgttttcccttgtgtagagggacatttacctctcattttctc-aaaaggtccttat |
12022586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 10170393 - 10170236
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||| |||||| |||| |||| | | |
|
|
| T |
10170393 |
aagctgaagacaaaatatggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctaaggcctttgccggatgactccgacgatcagaa |
10170294 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
|||| | || | |||||| ||||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
10170293 |
aaaacttaacactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaa |
10170236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 14684036 - 14684114
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgcc |
103 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14684036 |
aagctgaagacagaatctggaaatcccaggtaatcatctcatgcccagactcatcgcatgcatacctagggcctttgcc |
14684114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 10791759 - 10791658
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| ||||| |||| | |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||| |||| || |
|
|
| T |
10791759 |
tcaaagaagctaaagacagaatctggaaatcccaggtaattattccatgctcaaactcatcgcatgcatacctagggcctttgccggatgactccgacga |
10791660 |
T |
|
| Q |
119 |
tc |
120 |
Q |
| |
|
|| |
|
|
| T |
10791659 |
tc |
10791658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 7342351 - 7342428
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgc |
102 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
7342351 |
aagctgaggacaaaatctggaaatcccatgtaatcatctcatgcccaaactcatcacatgcatacctagggcctttgc |
7342428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 12845555 - 12845648
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| ||||| || |||||||| || |||||||| |
|
|
| T |
12845555 |
aagcggaagacaaaatatggaaatcccaggtaatcatctcatgccctaattcatcacatgcatatctaggccccttgccagacgaacccgaaga |
12845648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 133407 - 133469
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcat |
87 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
133407 |
aagctgaagataaaatatggaaattccaggtaattatctcatgccttaattcaccgcatgcat |
133469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 79054 - 78952
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| | |
|
|
| T |
79054 |
atcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgatg |
78955 |
T |
|
| Q |
118 |
atc |
120 |
Q |
| |
|
||| |
|
|
| T |
78954 |
atc |
78952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 18160343 - 18160488
Alignment:
| Q |
37 |
aaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctggaaaaagtcaatat |
136 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||| ||| ||| | || | |
|
|
| T |
18160343 |
aaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatgatcaggataaactaaacac |
18160442 |
T |
|
| Q |
137 |
tgttttcccttgtaatgacggacaaatacctctcattttttcaaaa |
182 |
Q |
| |
|
|||||| ||||||| || | |||| | ||||||||||| |||||| |
|
|
| T |
18160443 |
tgtttttccttgtagcgaggaacaactgcctctcattttctcaaaa |
18160488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 14324600 - 14324695
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatc |
120 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| |||| |
|
|
| T |
14324600 |
aagctgaagacaaaatatggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgacgatc |
14324695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 10828764 - 10828876
Alignment:
| Q |
16 |
acatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccga |
115 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| || ||||||| || ||| ||||||||| |||||||| | |||||||||| || |
|
|
| T |
10828764 |
acatcaaagaagctgatgataaaatctggaaatcccaggtaatcattccatgccctaattcaccgcatgcatttttagggcctcttccagatgaccaaga |
10828863 |
T |
|
| Q |
116 |
agatctggaaaaa |
128 |
Q |
| |
|
||| || |||||| |
|
|
| T |
10828864 |
agacctagaaaaa |
10828876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 11022556 - 11022668
Alignment:
| Q |
16 |
acatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccga |
115 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| || ||||||| || ||| ||||||||| |||||||| | |||||||||| || |
|
|
| T |
11022556 |
acatcaaagaagctgatgataaaatctggaaatcccaggtaatcattccatgccctaattcaccgcatgcatttttagggcctcttccagatgaccaaga |
11022655 |
T |
|
| Q |
116 |
agatctggaaaaa |
128 |
Q |
| |
|
||| || |||||| |
|
|
| T |
11022656 |
agacctagaaaaa |
11022668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 13347360 - 13347422
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcat |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||| || ||| | ||||||| |
|
|
| T |
13347360 |
aagctgaagataaaatctggaaatcccaggtaatcatctcataccctaattcaccacatgcat |
13347422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 10863300 - 10863226
Alignment:
| Q |
37 |
aaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgacc |
111 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || ||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
10863300 |
aaatctggaaatcccaggtaatcattccatgccctaattcaccgcatgcatttttagggccttttccagatgacc |
10863226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 3788 - 3686
Alignment:
| Q |
18 |
atcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaag |
117 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
3788 |
atcaaagaagctgaagacaaaatctggaaatctcagctaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgaag |
3689 |
T |
|
| Q |
118 |
atc |
120 |
Q |
| |
|
||| |
|
|
| T |
3688 |
atc |
3686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0270
Description:
Target: scaffold0270; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 16084 - 16209
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |||| |||||| |||| |||| || |
|
|
| T |
16084 |
aagctgaagacaaaatctggaaatcccaggtaatcatctcatgtccaaactcatcgcatgcatacctagggcctgtgccggatgactccgatgatcccga |
16183 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgta |
150 |
Q |
| |
|
|||| | || | |||||| ||||||| |
|
|
| T |
16184 |
aaaactaaacactgtttttccttgta |
16209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 47147 - 47248
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| || |
|
|
| T |
47147 |
tcaaagaagatgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgacga |
47246 |
T |
|
| Q |
119 |
tc |
120 |
Q |
| |
|
|| |
|
|
| T |
47247 |
tc |
47248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 51785 - 51886
Alignment:
| Q |
19 |
tcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||||| || |||||||| |||| ||| ||||||||||||||||||||||| || ||| |||| || |
|
|
| T |
51785 |
tcaaagaagatgaagacaaaatctggaaatcccaggtaatcatatcatgcccaaactaatcacatgcatacctagggcctttgccggacgactccgacga |
51884 |
T |
|
| Q |
119 |
tc |
120 |
Q |
| |
|
|| |
|
|
| T |
51885 |
tc |
51886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 57753 - 57628
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatctgga |
124 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||| |||| |||| ||| |
|
|
| T |
57753 |
aagctgaagacaaaatttggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactccgatgatcagga |
57654 |
T |
|
| Q |
125 |
aaaagtcaatattgttttcccttgta |
150 |
Q |
| |
|
| || | |||| ||||| ||||||| |
|
|
| T |
57653 |
agaactaaatacagtttttccttgta |
57628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1701 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1701
Description:
Target: scaffold1701; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 1202 - 1107
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaagatc |
120 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| |||| |
|
|
| T |
1202 |
aagctgaagacagaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgacgatc |
1107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0239 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 17952 - 18045
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccgaaga |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| || || |||||||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
17952 |
aagcggaagataaaatctggaaatcccaggtaatcatctcatgtcctaattcatcgcatgcatatctagggcctttgctagacgaccccgaaga |
18045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 126927 - 126843
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatga |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||| | |||||||| |
|
|
| T |
126927 |
aagcggaagataaaatctggaaatcccaggtaatcatctcatgccctaactcacctcatgcatacttagggcctctaccagatga |
126843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 119083 - 118999
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatga |
109 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||||| |||||| | ||||||||| |||||||| | |||||||| |
|
|
| T |
119083 |
aagcggaagataaaatctggagatcccaggtaatcatctcatgccctaactcaccacatgcatacttagggcctctaccagatga |
118999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 71723 - 71796
Alignment:
| Q |
25 |
aagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcct |
98 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||| |
|
|
| T |
71723 |
aagcggaagataaaatctggaaatcccaggtaattagctcatgccctaactcaccacatgcatacttagggcct |
71796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 8544 - 8431
Alignment:
| Q |
15 |
gacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatgaccccg |
114 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | ||||||| |||||||| ||| | |||| | | |
|
|
| T |
8544 |
gacatcaaggaagctgaggataaaatctggaaatcccaggtaattatctcgtgccctaactcaccacatgcatttttagggcctctgctacatgaacaag |
8445 |
T |
|
| Q |
115 |
aagatctggaaaaa |
128 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
8444 |
aagacctggaaaaa |
8431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 6574 - 6479
Alignment:
| Q |
14 |
ggacatcaaaaaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggcctttgccagatga |
109 |
Q |
| |
|
||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| || ||||| |||||||||| |
|
|
| T |
6574 |
ggacatcaaggaacctgaggataaaatctggaaatcccatgtaattatctcgtgccctaactcaccacatgcatatttaaggcctctgccagatga |
6479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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