View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_29 (Length: 409)
Name: NF6865A_low_29
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 32060458 - 32060103
Alignment:
| Q |
1 |
gagatgaacacaaaggtcagaacaaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagca |
100 |
Q |
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| T |
32060458 |
gagaagaacacaaaggtcagaacgaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagca |
32060359 |
T |
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| Q |
101 |
ttttattctttgagcccctcccatttccaaacattattccaagtagagatacatcaatgtgacatatcgtctaactactattgttaggaggaattttgat |
200 |
Q |
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| T |
32060358 |
ttttattctttgagcccctcccatttccaaacattattccaagtagacatacatcaatgtgacacatcgtctaactactattgttaggaggaattttgat |
32060259 |
T |
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| Q |
201 |
acgcaaatcattagttttgataccattgttgagtcatgaggggagcccaatgaatcatcatgttggactaagagcaaacactcaagtgagtcaaacacta |
300 |
Q |
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| T |
32060258 |
acgcaaatcattagttttgataccattgttgagtcacgaggggagcccagtaaatcatcatgttggaccaagagcaaacactcaagtgagtcaaacacta |
32060159 |
T |
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| Q |
301 |
aatctttatttaaaattttaatacattagatatatcaatcttctcatttatgtgtt |
356 |
Q |
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| T |
32060158 |
gatctttatttaaaattttaatacattagatatatcaatcttctcatttatatgtt |
32060103 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 37258096 - 37258011
Alignment:
| Q |
64 |
tcttcaatccatcattataaagcaaccaaacaaagcattttattctttga-gcccctcccatttccaaacattattccaagtagag |
148 |
Q |
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|||||||||||| ||| ||||||| ||||| ||||||||||||| ||||| || |||| ||||| |||||||||||||| |||||| |
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| T |
37258096 |
tcttcaatccataattgtaaagcagccaaagaaagcattttattttttgaggctcctctcattttcaaacattattccaggtagag |
37258011 |
T |
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