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This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_291 (Length: 226)

Name: NF6865A_low_291
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_291
NF6865A_low_291
[»] chr3 (12 HSPs)
chr3 (17-226)||(3303159-3303368)
chr3 (16-224)||(3321448-3321656)
chr3 (16-226)||(3309847-3310057)
chr3 (16-192)||(3201646-3201822)
chr3 (41-224)||(3220687-3220870)
chr3 (16-226)||(3356580-3356790)
chr3 (16-226)||(3722247-3722456)
chr3 (43-188)||(2837852-2837997)
chr3 (29-190)||(3197618-3197779)
chr3 (58-188)||(2855062-2855192)
chr3 (58-190)||(2808023-2808155)
chr3 (44-186)||(2769811-2769953)
[»] scaffold0691 (1 HSPs)
scaffold0691 (58-190)||(5402-5534)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 3303368 - 3303159
Alignment:
Q  17 tggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattt 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3303368 tggagttagagcgcaatgtgcacttgactagtctgataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctatattt 3303269  T
Q  117 tggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgttaggaatgaggagacaagaccattggag 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||| || |||||||    
T  3303268 tggtatatatcctgaggactactccatcaaacggaagagacttactcggcaatggatggcagaagggtttgttaagaaggaggggacaaaactattggag 3303169  T
Q  217 taagttgctg 226  Q
     |||||||||    
T  3303168 gaagttgctg 3303159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 3321656 - 3321448
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||| |||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3321656 atggagttagagcacaatgtgcacttgaatagtctaacaaagattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctatatt 3321557  T
Q  116 ttggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgttaggaatgaggagacaagaccattgga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  3321556 ttggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaagggtttgttaagaatgaggagataagaccattgga 3321457  T
Q  216 gtaagttgc 224  Q
    | |||||||    
T  3321456 ggaagttgc 3321448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 3310057 - 3309847
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||| ||| ||||| ||||||||||||| ||  |||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||    
T  3310057 atggagttagagcacaacgtgcatttgactagtctaacaaagattttatctcttagttatgatgatttgcctcaccacttgaaatcttgcatgctgtatt 3309958  T
Q  116 ttggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgttaggaatgaggagacaagaccattgga 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| | | |||||||    
T  3309957 ttggtatatatcctgaggactacaccatcaatcggaagagacttactcggcaatggatggctgaagggtttgttatgaatgaggagactaaatcattgga 3309858  T
Q  216 gtaagttgctg 226  Q
    | |||||||||    
T  3309857 ggaagttgctg 3309847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 3201646 - 3201822
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||| ||||||||||||  ||||||||||||||||||||| ||||    
T  3201646 atggagttagagcgcaatgtgcatttgacaagtctaataaagattttatctctaagttacgatgatttgcctagccatttgaaatcatgcatgctgtatt 3201745  T
Q  116 ttggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgttagg 192  Q
    ||||||||||||| ||||||||| |||||| |  ||||||||||||||||||||||||||| || ||||||||||||    
T  3201746 ttggtatatatcccgaggactacaccatcactacgaagagacttactcggcaatggatggctgaagggtttgttagg 3201822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 3220870 - 3220687
Alignment:
Q  41 tgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactc 140  Q
    ||||| ||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||      
T  3220870 tgactggtctaatgaggatattatcccttagttatgatgatttgccttaccatttgaaatcatgtatgttatattttggtatatatcctgaggactacgt 3220771  T
Q  141 catcaatcggaagagacttactcggcaatggatggcagaggggtttgttaggaatgaggagacaagaccattggagtaagttgc 224  Q
    |||||| ||||| ||| ||||||||||||||||||| || |||||||||| ||||||| | ||||||||||||||| |||||||    
T  3220770 catcaaacggaaaagaattactcggcaatggatggctgaagggtttgttaagaatgagcacacaagaccattggaggaagttgc 3220687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 3356790 - 3356580
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||| ||||||| |||||| | || |    
T  3356790 atggagttagagcgcaatgtgcacttgactagtataataaggattttaagtcttagttatgatgatttgccttaccatctgaaatcctgcatgttatact 3356691  T
Q  116 ttggtatatatcctgaggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgttaggaatgaggagacaagaccattgga 215  Q
    |||| || ||||| |||||||||  ||| || || || ||||||||| ||||||||||||| || |||||||||| ||||||| | ||||||||||| ||    
T  3356690 ttggcatgtatccagaggactacatcattaaacgaaaaagacttactaggcaatggatggctgaagggtttgttaagaatgagcacacaagaccattcga 3356591  T
Q  216 gtaagttgctg 226  Q
    | |||||||||    
T  3356590 ggaagttgctg 3356580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 3722247 - 3722456
Alignment:
Q  16 atggagttagagcgcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctatt 115  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| | || |    
T  3722247 atggagttagagcgcaatgtgcatttgactagtataataaggattttatgtcttagttatgatgatttgccttaccatctgaaatcatgcatgttatact 3722346  T
Q  116 ttggtatatatcctga-ggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgttaggaatgaggagacaagaccattgg 214  Q
    |||| || |||||||| |||||||  |||||| || || ||| ||||| ||||||    ||| || |||||||||| ||||||| | ||||||||||| |    
T  3722347 ttggcatgtatcctgagggactacatcatcaaacgaaaaagaattactaggcaat--ccggctgaagggtttgttaagaatgagcacacaagaccattcg 3722444  T
Q  215 agtaagttgctg 226  Q
    || |||||||||    
T  3722445 aggaagttgctg 3722456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 2837997 - 2837852
Alignment:
Q  43 actagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactcca 142  Q
    |||||||||| ||  ||||||||||| ||||||||     |||| ||| |||| ||| |||||||  | ||||||||||||||||| ||||| |||||||    
T  2837997 actagtctaacaaagattttatctctcagttatgacagcctgccgtactatttaaaaccatgcattttgtattttggtatatatccagaggattactcca 2837898  T
Q  143 tcaatcggaagagacttactcggcaatggatggcagaggggtttgt 188  Q
    | ||||  | |||||| ||| |||||||||| || |||||||||||    
T  2837897 ttaatcataggagactaactaggcaatggatagctgaggggtttgt 2837852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 3197779 - 3197618
Alignment:
Q  29 gcaatgtgcacttgactagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcc 128  Q
    |||||||||| || ||| |||||| ||  ||||||||||  |||||||| ||| | ||||  ||||| |||  ||||||| | ||||||||||| |||||    
T  3197779 gcaatgtgcatttcactcgtctaacaatgattttatctcggagttatgaggatcttccttgtcatttaaaactatgcatgttgtattttggtatctatcc 3197680  T
Q  129 tgaggactactccatcaatcggaagagacttactcggcaatggatggcagaggggtttgtta 190  Q
     ||| || || |||||||| | |||||||||||| |||||||||| || || || |||||||    
T  3197679 ggagaaccacaccatcaattgtaagagacttactaggcaatggatagccgaaggatttgtta 3197618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 2855192 - 2855062
Alignment:
Q  58 attttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggaagagac 157  Q
    ||||||||||| ||||||||     |||| ||| |||| ||| |||||||  | ||||||||||||||||| ||||| |||||||| ||||  | |||||    
T  2855192 attttatctctcagttatgacagcctgccgtactatttaaaaccatgcattttgtattttggtatatatccagaggattactccattaatcataggagac 2855093  T
Q  158 ttactcggcaatggatggcagaggggtttgt 188  Q
    | ||| |||||||||| || |||||||||||    
T  2855092 taactaggcaatggatagctgaggggtttgt 2855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 2808023 - 2808155
Alignment:
Q  58 attttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggaagagac 157  Q
    |||||||| || ||||| ||||  ||||| ||| | |||||| | |||||  | ||||||||||||||||| ||||||||||| || ||||  ||||||     
T  2808023 attttatcactgagttacgatggcttgccctactacttgaaaccctgcattttgtattttggtatatatccagaggactactctattaatcataagagat 2808122  T
Q  158 ttactcggcaatggatggcagaggggtttgtta 190  Q
    | ||||| |||||||| || || ||||||||||    
T  2808123 taactcgacaatggatagctgaagggtttgtta 2808155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 2769811 - 2769953
Alignment:
Q  44 ctagtctaataagaattttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccat 143  Q
    ||||||||| ||  ||||| ||||||||||||||||   | |||||| | |||||| |||||||  | |||||||||||||||||| | ||||| || ||    
T  2769811 ctagtctaacaaagattttgtctcttagttatgatggccttccttactacttgaaaccatgcattttgtattttggtatatatcctcaagactattctat 2769910  T
Q  144 caatcggaagagacttactcggcaatggatggcagaggggttt 186  Q
     |||   |||||| | || ||||||||||| || || ||||||    
T  2769911 taataataagagattaacacggcaatggatagctgaagggttt 2769953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 5534 - 5402
Alignment:
Q  58 attttatctcttagttatgatgatttgccttaccatttgaaatcatgcatgctctattttggtatatatcctgaggactactccatcaatcggaagagac 157  Q
    ||||| || |||||||||||||   |||||||| | |||||| |||||||  | ||||||||||||||||| |||||||| || || ||||  ||||||     
T  5534 attttgtcacttagttatgatggcctgccttactacttgaaaccatgcattttgtattttggtatatatccagaggactattctattaatcataagagat 5435  T
Q  158 ttactcggcaatggatggcagaggggtttgtta 190  Q
    | ||||| |||||||| || || ||||||||||    
T  5434 taactcgtcaatggatagctgaagggtttgtta 5402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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