View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_292 (Length: 226)

Name: NF6865A_low_292
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_292
NF6865A_low_292
[»] chr3 (4 HSPs)
chr3 (1-80)||(7779307-7779386)
chr3 (174-219)||(7779169-7779214)
chr3 (4-79)||(8713718-8713794)
chr3 (4-79)||(9065605-9065681)
[»] chr1 (2 HSPs)
chr1 (10-80)||(25664714-25664784)
chr1 (11-80)||(25132538-25132608)
[»] chr8 (1 HSPs)
chr8 (10-66)||(13581725-13581781)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 7779386 - 7779307
Alignment:
Q  1 ttgttgttggggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag 80  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  7779386 ttgttgttggggattgttgatatttcgacaaggtaatcaatagaatttattttgtcaataattaggctaggttaggtaag 7779307  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 7779214 - 7779169
Alignment:
Q  174 cacgtccttctaccctcacttttaattgtgttaacacatagctccc 219  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||    
T  7779214 cacgtccttctatcctcacttttaattgtgttaacaaatagctccc 7779169  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 8713794 - 8713718
Alignment:
Q  4 ttgttggggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaa 79  Q
    |||| ||||||| |||||||| |||||| ||||||  |||| |||||||| || | |||||||| ||||||||||||    
T  8713794 ttgtcggggattgttgatattacgacaaggtaatcggtagaatttatttttgtgagtaattaggttaggttaggtaa 8713718  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 9065681 - 9065605
Alignment:
Q  4 ttgttggggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaa 79  Q
    |||| ||||||| |||||||| |||||| ||||||  |||| |||||||| || | |||||||| ||||||||||||    
T  9065681 ttgtcggggattgttgatattacgacaaggtaatcggtagaatttatttttgtgagtaattaggttaggttaggtaa 9065605  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 25664784 - 25664714
Alignment:
Q  10 gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag 80  Q
    |||||| ||||||||||||||| ||||||  |||| |||||||||| |||||||||  |||||||||||||    
T  25664784 gggattgttgatatttcgacaaggtaatcggtagaatttattttgtgaataattagcttaggttaggtaag 25664714  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 25132608 - 25132538
Alignment:
Q  11 ggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaag 80  Q
    ||||| |||||||||| |||| ||||||| |||| |||||||| || |||||||||  |||||||||||||    
T  25132608 ggattgttgatatttcaacaaggtaatcagtagaatttatttttgtgaataattagtttaggttaggtaag 25132538  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 13581781 - 13581725
Alignment:
Q  10 gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattagg 66  Q
    |||||| |||||||||||| ||  ||||||||||| |||||||||| ||||||||||    
T  13581781 gggattgttgatatttcgaaaagttaatcaatagaatttattttgtgaataattagg 13581725  T

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