View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_294 (Length: 225)
Name: NF6865A_low_294
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_294 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 42517712 - 42517802
Alignment:
| Q |
135 |
aagaccatgcaaaacccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaac |
225 |
Q |
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| T |
42517712 |
aagaccatgcaaaacccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaac |
42517802 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 1239093 - 1239183
Alignment:
| Q |
135 |
aagaccatgcaaaacccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaac |
225 |
Q |
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| T |
1239093 |
aagaccatgcgaatcccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcgcctggatttccatcaac |
1239183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 41971599 - 41971689
Alignment:
| Q |
135 |
aagaccatgcaaaacccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaac |
225 |
Q |
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| T |
41971599 |
aagaccatgtgaatcccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaac |
41971689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 21403577 - 21403508
Alignment:
| Q |
155 |
acatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaac |
225 |
Q |
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| T |
21403577 |
acatacacatatatgcctaccacaacaatca-tacataccactttgacagctcacctggatttccatcaac |
21403508 |
T |
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