View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_295 (Length: 225)
Name: NF6865A_low_295
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_295 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 30810500 - 30810322
Alignment:
| Q |
30 |
attatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataagtaaataaatgttga--agagtttttatagtgtaaaagaaattt |
127 |
Q |
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| T |
30810500 |
attatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagtaaataaatgttgaatagagtttttatagtgtaaaagaaattt |
30810401 |
T |
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| Q |
128 |
gaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacatttaatgtgaggggagattgtg |
204 |
Q |
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| T |
30810400 |
gaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacatttaatgtgaggggagattgtg |
30810322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 30820180 - 30820124
Alignment:
| Q |
30 |
attatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
86 |
Q |
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| T |
30820180 |
attatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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