View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_296 (Length: 225)
Name: NF6865A_low_296
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_296 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 54793601 - 54793812
Alignment:
| Q |
14 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
113 |
Q |
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| T |
54793601 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
54793700 |
T |
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| Q |
114 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttt |
213 |
Q |
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| T |
54793701 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgttt |
54793800 |
T |
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| Q |
214 |
ttgaagtagcta |
225 |
Q |
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|||||||||||| |
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| T |
54793801 |
ttgaagtagcta |
54793812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 52286282 - 52286490
Alignment:
| Q |
14 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
113 |
Q |
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||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
52286282 |
gaatgggagaccttgatcagaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctcttt |
52286381 |
T |
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| Q |
114 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttt |
213 |
Q |
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| T |
52286382 |
ttggcaggagaatgtgaagaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctgtgttt |
52286481 |
T |
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| Q |
214 |
ttgaagtag |
222 |
Q |
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| T |
52286482 |
ttgcagtag |
52286490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 54775932 - 54775827
Alignment:
| Q |
120 |
ggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
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| Q |
220 |
tagcta |
225 |
Q |
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|||||| |
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| T |
54775832 |
tagcta |
54775827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 801450 - 801656
Alignment:
| Q |
16 |
atgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgttt |
115 |
Q |
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|||||||||||||| |||||||||||||| | | |||||||||||||||| |||| || ||||||||||| |||||| | |||||||||||| | | |
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| T |
801450 |
atgggagaccttgaccagaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttat |
801546 |
T |
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| Q |
116 |
ggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttttt |
215 |
Q |
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||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||| | | |||||||||| ||||| |||||||||||||||| |
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| T |
801547 |
ggcaggaaaatgtgaagaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgttttt |
801646 |
T |
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| Q |
216 |
gaagtagcta |
225 |
Q |
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| T |
801647 |
ggagtggcta |
801656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 54775980 - 54775950
Alignment:
| Q |
14 |
gaatgggagaccttgatgagaaggtttttgt |
44 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54775980 |
gaatgggagaccttgatgagaaggtttttgt |
54775950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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