View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_30 (Length: 408)
Name: NF6865A_low_30
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 251 - 392
Target Start/End: Complemental strand, 45445519 - 45445378
Alignment:
| Q |
251 |
ggtgacgagggtgattggaatgtggagcacactcacttaagtatttttaaacttgttcatacattttagtccaatggatgatattaactcctctcatata |
350 |
Q |
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| T |
45445519 |
ggtgacgagggtgattggaatgtggagcacactcacttaagtatttttaaacttgttcatacattttagtccaatggatgatattaactcctctcatata |
45445420 |
T |
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| Q |
351 |
aatatatatcttttgacattagctgtgtcgtgtctgatgtcc |
392 |
Q |
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| T |
45445419 |
aatatatatcttttgacattagctgtgtcgtgtctggtgtcc |
45445378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 45445725 - 45445597
Alignment:
| Q |
123 |
agagccctctttaaatggaagatttgttatttgcctctttaattgatccaatgattgttcctttgcctcttggagcttctttatcatgtgtaaatcgtgc |
222 |
Q |
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| T |
45445725 |
agagccctctttaaatggaatatttgttatttgcctctttaattgatccaatgattgttcctttgcctcttggagcttctttatcatgtgtaaatcgtgc |
45445626 |
T |
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| Q |
223 |
agctaacaatataaggagtgtgtgaatcg |
251 |
Q |
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| T |
45445625 |
agctaacaatataaggagtgtgtgaatcg |
45445597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 45445828 - 45445779
Alignment:
| Q |
20 |
catcaccgctatttacgtcattagagttgcaatcaaaatacattgattcg |
69 |
Q |
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| T |
45445828 |
catcaccgctatttacgtcattagagttgcaatcaaaatacattgattcg |
45445779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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