View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_303 (Length: 224)
Name: NF6865A_low_303
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_303 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 34683397 - 34683208
Alignment:
| Q |
19 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcat |
118 |
Q |
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| T |
34683397 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcat |
34683298 |
T |
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| Q |
119 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccactttcatagagggtctgctcataatcttcatgatgtc |
208 |
Q |
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| T |
34683297 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccacttttatagaggttctgctcataatcttcatgatgtc |
34683208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 34699611 - 34699430
Alignment:
| Q |
24 |
tgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcattttct |
123 |
Q |
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| T |
34699611 |
tgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaatattcatctctttgaccaaactatcaagtttctttgactttgtcatattat |
34699512 |
T |
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| Q |
124 |
ttattgtacttgccaactctcttaggacatttgcagagttgtctcccactttcatagagggtctgctcataatcttcatgat |
205 |
Q |
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| T |
34699511 |
tgattgtaattgatagctctcttaagacactcgcagagttggctcccactttcattgatgttgtgctcataatcttcttgat |
34699430 |
T |
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