View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_305 (Length: 223)

Name: NF6865A_low_305
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_305
NF6865A_low_305
[»] chr4 (7 HSPs)
chr4 (101-218)||(13771595-13771712)
chr4 (18-106)||(13772466-13772555)
chr4 (130-203)||(40252295-40252368)
chr4 (126-207)||(40058975-40059056)
chr4 (127-191)||(41621735-41621799)
chr4 (131-212)||(34835527-34835608)
chr4 (127-207)||(25852208-25852288)
[»] chr1 (8 HSPs)
chr1 (130-206)||(52135127-52135203)
chr1 (131-212)||(1378743-1378824)
chr1 (127-207)||(15059525-15059605)
chr1 (127-207)||(46607804-46607884)
chr1 (127-210)||(27454986-27455069)
chr1 (127-207)||(8077641-8077721)
chr1 (128-200)||(24216973-24217045)
chr1 (127-191)||(40802206-40802270)
[»] chr7 (9 HSPs)
chr7 (127-212)||(22264620-22264705)
chr7 (130-206)||(36173036-36173112)
chr7 (131-200)||(1469114-1469183)
chr7 (128-212)||(9769585-9769669)
chr7 (126-180)||(31197588-31197642)
chr7 (127-200)||(40332097-40332170)
chr7 (125-201)||(2344295-2344371)
chr7 (127-207)||(2751269-2751349)
chr7 (127-207)||(10091186-10091266)
[»] chr2 (7 HSPs)
chr2 (128-209)||(6007010-6007091)
chr2 (131-201)||(18691980-18692050)
chr2 (128-207)||(8192474-8192553)
chr2 (126-207)||(25293159-25293240)
chr2 (131-207)||(4852556-4852632)
chr2 (168-212)||(9088079-9088123)
chr2 (132-212)||(36179875-36179955)
[»] scaffold0028 (1 HSPs)
scaffold0028 (126-190)||(27769-27833)
[»] chr6 (7 HSPs)
chr6 (127-191)||(33499468-33499532)
chr6 (127-201)||(9208246-9208320)
chr6 (132-210)||(21182325-21182403)
chr6 (127-207)||(11007159-11007239)
chr6 (137-185)||(11675196-11675244)
chr6 (127-207)||(15360221-15360301)
chr6 (127-207)||(22576061-22576141)
[»] chr5 (4 HSPs)
chr5 (126-200)||(23270652-23270726)
chr5 (129-207)||(19145534-19145612)
chr5 (126-190)||(12317290-12317354)
chr5 (127-207)||(27498854-27498934)
[»] chr3 (8 HSPs)
chr3 (127-212)||(40133567-40133652)
chr3 (125-201)||(48977380-48977456)
chr3 (127-210)||(7485645-7485728)
chr3 (127-206)||(32151419-32151497)
chr3 (126-207)||(4252519-4252600)
chr3 (127-212)||(21362937-21363022)
chr3 (127-212)||(38732960-38733045)
chr3 (127-207)||(40940819-40940899)
[»] chr8 (5 HSPs)
chr8 (169-212)||(5202208-5202251)
chr8 (130-189)||(34694717-34694776)
chr8 (127-206)||(42643242-42643321)
chr8 (127-207)||(3734746-3734826)
chr8 (131-187)||(28908823-28908879)
[»] scaffold0576 (1 HSPs)
scaffold0576 (127-207)||(5205-5285)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 13771712 - 13771595
Alignment:
Q  101 ttgtttatataatacattaggattacaacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgatt 200  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| || ||| ||||||||||||||||||||||||||||||||    
T  13771712 ttgtttttataatacattaggattccaacccatttggggttggtctgatggttggcttgggatcttgaagtttgctcatctcaaggtctcaaattcgatt 13771613  T
Q  201 ctctctgatgtccatctc 218  Q
    | |||||||||| |||||    
T  13771612 ccctctgatgtcaatctc 13771595  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 13772555 - 13772466
Alignment:
Q  18 aatatctacgtgggatgtggtatgatttgatttgatgaatgtgt-nnnnnnntgtatacgattagtgtgcataaatttatctatttgttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||        | |||| ||||||| |||||||||||||||||||||||    
T  13772555 aatatctacgtgggatgtggtatgatttgatttgatgaatgtgtaaaaaaaatatatatgattagtatgcataaatttatctatttgttt 13772466  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 40252295 - 40252368
Alignment:
Q  130 ccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctc 203  Q
    |||||||||||||||||  | |||||| |||||| ||||||| ||||  |||||||||||||| ||||||||||    
T  40252295 ccatttggggttggtctagtagttgacttggaatcttggagtgtgcttctctcaaggtctcaagttcgattctc 40252368  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 40059056 - 40058975
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    |||||||||||||||||| ||  |||||| | ||| || ||||||||||||| |||  ||||||||  ||||||||||||||    
T  40059056 caacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctg 40058975  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 41621799 - 41621735
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctca 191  Q
    ||||||||||||||||| || ||||||| | ||  || ||||||||||||| |||||||||||||    
T  41621799 aacccatttggggttggcctaatggttggcttgagatcttggagtttgctcctctcaaggtctca 41621735  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 34835527 - 34835608
Alignment:
Q  131 catttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    ||||||||||||||||  |||||| | ||| || || |||||||||| ||| |||||||||  |||||||| ||||| ||||    
T  34835527 catttggggttggtctagtggttggcttgggatcttagagtttgctcctcttaaggtctcatgttcgattccctctggtgtc 34835608  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 25852208 - 25852288
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  25852208 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 25852288  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 52135127 - 52135203
Alignment:
Q  130 ccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctct 206  Q
    |||||||||||||||||  |||||||| ||| || |||||||||||||||||||| ||||||  ||||||| |||||    
T  52135127 ccatttggggttggtctagtggttgacttgggatcttggagtttgctcatctcaatgtctcaggttcgattatctct 52135203  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 1378743 - 1378824
Alignment:
Q  131 catttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    ||||||||||||||||  |||||||| |||||| ||||||||| ||| ||  |||||||||  ||||||| |||||| ||||    
T  1378743 catttggggttggtctagtggttgacttggaatcttggagtttactcctccaaaggtctcatgttcgattttctctggtgtc 1378824  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 15059605 - 15059525
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | |||||| ||||||||||||| ||   ||||||||  ||||||||||||||    
T  15059605 aacccatttggggttggcctagtggttggcttggaatcttggagtttgctcctccagaggtctcaggttcgattctctctg 15059525  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 46607804 - 46607884
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||||| ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  46607804 aacccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 46607884  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 27455069 - 27454986
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatg 210  Q
    ||||||||||||||||||||  |||||| | ||| || ||||||||||||| ||   ||||||||  |||||||| ||||||||    
T  27455069 aacccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcactctgatg 27454986  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 8077641 - 8077721
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||   ||||||||  ||||||||||||||    
T  8077641 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctg 8077721  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 24216973 - 24217045
Alignment:
Q  128 acccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgatt 200  Q
    |||||||||||||||  ||  |||||||| ||| || ||||||| ||||| |||||||||||||  |||||||    
T  24216973 acccatttggggttgacctagtggttgacttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 24217045  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 40802270 - 40802206
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctca 191  Q
    |||||||||||||||||  |  |||||| | ||  || |||||||||||||||||||||||||||    
T  40802270 aacccatttggggttggctttgtggttggcttgagatattggagtttgctcatctcaaggtctca 40802206  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 22264705 - 22264620
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    ||||||||||||||||| |  | |||||   |||||| ||||||||||||| ||||||||||||| ||||||||| ||||| ||||    
T  22264705 aacccatttggggttggccgaagggttggtttggaatcttggagtttgctcctctcaaggtctcagattcgattccctctggtgtc 22264620  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 36173036 - 36173112
Alignment:
Q  130 ccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctct 206  Q
    |||||||||||||| || ||| ||||| ||| ||||||||||||| |||||||||||| |||  |||||||| ||||    
T  36173036 ccatttggggttggccttatgattgacttgggattttggagtttgttcatctcaaggtttcaggttcgattccctct 36173112  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 1469114 - 1469183
Alignment:
Q  131 catttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgatt 200  Q
    ||||||||||||| ||  |||||||| || ||| |||||||||| ||||||||||||||||  |||||||    
T  1469114 catttggggttggcctagtggttgacttgaaatcttggagtttgttcatctcaaggtctcaggttcgatt 1469183  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 9769585 - 9769669
Alignment:
Q  128 acccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    |||||||||||||||| || ||||||||  |||||| ||||||| ||||| |||||| || ||   || ||||||||||||||||    
T  9769585 acccatttggggttgggctaatggttgatttggaatcttggagtgtgctcctctcaatgtttcgggtttgattctctctgatgtc 9769669  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 31197588 - 31197642
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatc 180  Q
    |||||||||||||||||||||  |||||| | ||| || ||||||||||||||||    
T  31197588 caacccatttggggttggtctagtggttggcttgggatcttggagtttgctcatc 31197642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 40332097 - 40332170
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgatt 200  Q
    ||||||||||| ||||||||  |||||| | || ||| ||||||||||||| ||| |||||||||  |||||||    
T  40332097 aacccatttggagttggtctagtggttggcttgaaatcttggagtttgctcctctaaaggtctcaggttcgatt 40332170  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 2344295 - 2344371
Alignment:
Q  125 acaacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattc 201  Q
    ||||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||  ||| ||||| |||||||||    
T  2344295 acaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaagctctcagattcgattc 2344371  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 2751269 - 2751349
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  2751269 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 2751349  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 10091186 - 10091266
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||||||  |||||| | ||| || ||||||||||||| ||   ||||||||  |||||||| |||||    
T  10091186 aacccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 10091266  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 6007091 - 6007010
Alignment:
Q  128 acccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgat 209  Q
    |||||||||| ||||||||| |||||||| |||||| ||||||| ||||  |||||||||   | |||||||||||||||||    
T  6007091 acccatttggagttggtctggtggttgacttggaatcttggagtgtgcttctctcaaggttctagattcgattctctctgat 6007010  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 18691980 - 18692050
Alignment:
Q  131 catttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattc 201  Q
    ||||||||||||| || ||||||  | |||||||||||||| ||||||||||||| |||||  ||||||||    
T  18691980 catttggggttggcctaatggtttgcttggaattttggagtgtgctcatctcaagatctcaggttcgattc 18692050  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 8192553 - 8192474
Alignment:
Q  128 acccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    |||||||||||||||| ||  |||||| | ||| || ||||||| ||||| |||||||||||||  |||||||| |||||    
T  8192553 acccatttggggttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctg 8192474  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 25293159 - 25293240
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||| |||||||||  |||||||| ||| || ||||||||||||| ||   ||||||||  |||||||| |||||    
T  25293159 caacccatttgaggttggtctagtggttgacttgggatcttggagtttgctcctcgagaggtctcaggttcgattccctctg 25293240  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 4852556 - 4852632
Alignment:
Q  131 catttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||  ||  |||||||| |||||| ||||||||||||| ||  |||||||||  |||||||| |||||    
T  4852556 catttggggttgacctagtggttgacttggaatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 4852632  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 9088123 - 9088079
Alignment:
Q  168 gagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    |||||||||| ||||||| ||||||||||||||  ||||||||||    
T  9088123 gagtttgctcctctcaagatctcaaattcgatttcctctgatgtc 9088079  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 36179875 - 36179955
Alignment:
Q  132 atttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    |||||||||||||||| || || || | | || |||||||||  ||||||| ||||||||  |||||||||| ||||||||    
T  36179875 atttggggttggtctggtgattaacttaggatcttggagttttttcatctcgaggtctcatgttcgattctccctgatgtc 36179955  T

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Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 27769 - 27833
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctc 190  Q
    |||||||||||||||||||||  ||||||   ||| |||||||||||||||| ||||||||||||    
T  27769 caacccatttggggttggtctagtggttggtttgggattttggagtttgctcctctcaaggtctc 27833  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 33499468 - 33499532
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctca 191  Q
    ||||||||||||||||| ||| |||||| | ||| || ||||||||||||| |||||||||||||    
T  33499468 aacccatttggggttggcctggtggttggcttgggatcttggagtttgctcctctcaaggtctca 33499532  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 9208246 - 9208320
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattc 201  Q
    |||||||||||||||| |||  ||||||   ||| || ||||||||||||| |||||||||||||  ||||||||    
T  9208246 aacccatttggggttgttctagtggttggattgggatcttggagtttgctcctctcaaggtctcaggttcgattc 9208320  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 21182325 - 21182403
Alignment:
Q  132 atttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatg 210  Q
    ||||||||||| |||||| |||| | ||| |||||||||| ||||| ||||||| ||| | ||||||||| || |||||    
T  21182325 atttggggttgatctgattgttggcttgggattttggagtgtgctcctctcaagctctgagattcgattccctgtgatg 21182403  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 11007159 - 11007239
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    |||||||||||||||| |||  |||||| | ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  11007159 aacccatttggggttgatctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattcactctg 11007239  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 11675196 - 11675244
Alignment:
Q  137 gggttggtctgatggttgacgtggaattttggagtttgctcatctcaag 185  Q
    ||||||| ||||||||||||||||||| ||| ||| ||||| |||||||    
T  11675196 gggttggcctgatggttgacgtggaatcttgaagtgtgctcctctcaag 11675244  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 15360301 - 15360221
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  15360301 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 15360221  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 22576061 - 22576141
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||   |||||||| ||||||||| |||||    
T  22576061 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctctg 22576141  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 23270726 - 23270652
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgatt 200  Q
    |||||||||||||||||| ||  |||||| | ||| || ||||||||||||||||  |||||||||| |||||||    
T  23270726 caacccatttggggttggcctagtggttggcttgggatcttggagtttgctcatccaaaggtctcaagttcgatt 23270652  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 19145612 - 19145534
Alignment:
Q  129 cccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||| ||  |||||||| ||| || ||||||| ||||| ||||||||||||   |||||||| |||||    
T  19145612 cccatttggggttggcctagtggttgacttgggatcttggagtatgctcctctcaaggtctccggttcgattccctctg 19145534  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 12317354 - 12317290
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctc 190  Q
    |||||||||||||||||| ||  |||||| | |||||| ||||||||||||| |||  |||||||    
T  12317354 caacccatttggggttggcctagtggttggcttggaatcttggagtttgctcctcttgaggtctc 12317290  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 27498934 - 27498854
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||  ||  |||||| | |||||| ||||||||||||| |||  ||||||||  |||||||| |||||    
T  27498934 aacccatttggggttgacctagtggttggcttggaatcttggagtttgctcctctagaggtctcaggttcgattccctctg 27498854  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 40133652 - 40133567
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    ||||||||||||||||| ||  |||||| | ||| |||||||||||||||| ||  |||||||||  |||||||| ||||| ||||    
T  40133652 aacccatttggggttggcctagtggttggcttgggattttggagtttgctcctccaaaggtctcaggttcgattccctctggtgtc 40133567  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 48977380 - 48977456
Alignment:
Q  125 acaacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattc 201  Q
    ||||||||||||||||||| ||  |||||||| ||| || ||||||||||||| ||  |||||||||  ||||||||    
T  48977380 acaacccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 48977456  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 7485728 - 7485645
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatg 210  Q
    |||||||||||||||||  |  |||||||| ||| || ||||||||||||| ||  |||||||||  |||||||| ||||||||    
T  7485728 aacccatttggggttggcatagtggttgacttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctgatg 7485645  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 32151419 - 32151497
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctct 206  Q
    |||||||||||| |||| ||  |||||||| ||| || ||||||||||||| ||  ||||| ||||||||||||||||||    
T  32151419 aacccatttggg-ttggcctagtggttgacttgggatcttggagtttgctcctccaaaggtttcaaattcgattctctct 32151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 4252600 - 4252519
Alignment:
Q  126 caacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    |||||||||||||||||| ||  |||||| | ||  || ||||||| ||||| |||||||||||||| || ||||| |||||    
T  4252600 caacccatttggggttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgattccctctg 4252519  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 21362937 - 21363022
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    ||||||||||||||||| ||  |||||||| ||| || ||||||||||||| ||   ||||||||  |||||||| ||||| ||||    
T  21362937 aacccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtc 21363022  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 38732960 - 38733045
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    |||||||||| |||||| || ||||||||| |||||| |||||||||| || ||   ||||||||  | |||||||||||| ||||    
T  38732960 aacccatttgaggttgggctaatggttgacttggaatcttggagtttgttcctccagaggtctcaggtccgattctctctgttgtc 38733045  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 40940819 - 40940899
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||||||  |||||| | ||| || ||||||||||||| ||   ||||||||  |||||||| |||||    
T  40940819 aacccatttggggttggtctagtggttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 40940899  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 5202251 - 5202208
Alignment:
Q  169 agtttgctcatctcaaggtctcaaattcgattctctctgatgtc 212  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||    
T  5202251 agtttgctcatctcaaagtctcaagttcgattttctctgatgtc 5202208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 34694776 - 34694717
Alignment:
Q  130 ccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtct 189  Q
    |||||||||||||||||  |||||||| ||  || ||||||||||||| |||||||||||    
T  34694776 ccatttggggttggtctagtggttgacttgtgatcttggagtttgctcctctcaaggtct 34694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 42643321 - 42643242
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctct 206  Q
    ||||||||||||||||| ||  |||||||| ||| || ||||||||||||| ||   |||||||| ||||||||| ||||    
T  42643321 aacccatttggggttggcctagtggttgacttgggatcttggagtttgctcctccagaggtctcagattcgattccctct 42643242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 3734826 - 3734746
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  3734826 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 3734746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 28908823 - 28908879
Alignment:
Q  131 catttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggt 187  Q
    ||||||| ||||||||  ||||||   |||||||||||||||||||| |||||||||    
T  28908823 catttggagttggtctagtggttggtttggaattttggagtttgctcctctcaaggt 28908879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 5285 - 5205
Alignment:
Q  127 aacccatttggggttggtctgatggttgacgtggaattttggagtttgctcatctcaaggtctcaaattcgattctctctg 207  Q
    ||||||||||||||||| ||  |||||| | ||| || ||||||||||||| ||  |||||||||  |||||||| |||||    
T  5285 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 5205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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