View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_308 (Length: 222)
Name: NF6865A_low_308
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_308 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 25207541 - 25207334
Alignment:
| Q |
15 |
agtttcccacgatcttctttagatatcggatgcatattataatcctaaaaagcctgttccatctgataagtactcaacgtgtatggtgcgctaatagtag |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
25207541 |
agttgcccacgatcttctttagatatcggatgcatattataatcctaaaaagcatgttccatctgataaatactcaatgtgtatggtgcgctaatagcag |
25207442 |
T |
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| Q |
115 |
aaggtctaggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagatgacttgccgcacattatccaccctgaaaa |
214 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
25207441 |
gagatctaggaatgttctgaacatatctaaattgcctctgcacatgctccgacaagtatggacgataacatgacttgccgcacattgtccaccctgaaaa |
25207342 |
T |
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| Q |
215 |
ccaaatga |
222 |
Q |
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|||||||| |
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| T |
25207341 |
ccaaatga |
25207334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 32687585 - 32687792
Alignment:
| Q |
15 |
agtttcccacgatcttctttagatatcggatgcatattataatcctaaaaagcctgttccatctgataagtactcaacgtgtatggtgcgctaatagtag |
114 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||| ||||| || |
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| T |
32687585 |
agttgcccacgatcttcttcagatatcagatgcatattataatcctgaaaagcctgttccatctgataaatactcaatgtgcatggtgcgccaatagcag |
32687684 |
T |
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| Q |
115 |
aaggtctaggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagatgacttgccgcacattatccaccctgaaaa |
214 |
Q |
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| ||||||||| |||||||||| | | ||||||||||| ||| |||| | |||| |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
32687685 |
gatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctccggcaagtgtggacgataacatgacacaccgcacattatccaccctgaaaa |
32687784 |
T |
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| Q |
215 |
ccaaatga |
222 |
Q |
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|||||||| |
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| T |
32687785 |
ccaaatga |
32687792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 1199773 - 1199980
Alignment:
| Q |
15 |
agtttcccacgatcttctttagatatcggatgcatattataatcctaaaaagcctgttccatctgataagtactcaacgtgtatggtgcgctaatagtag |
114 |
Q |
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|||| |||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||| ||||| || |
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| T |
1199773 |
agttgcccacgatcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgatatatactcaatgtgcatggtgcgccaatagcag |
1199872 |
T |
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| Q |
115 |
aaggtctaggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagatgacttgccgcacattatccaccctgaaaa |
214 |
Q |
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| T |
1199873 |
gatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatgacacaccacacattatccaccctgaaaa |
1199972 |
T |
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| Q |
215 |
ccaaatga |
222 |
Q |
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|||||||| |
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| T |
1199973 |
ccaaatga |
1199980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 29381046 - 29381179
Alignment:
| Q |
86 |
actcaacgtgtatggtgcgctaatagtagaaggtctaggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagat |
185 |
Q |
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|||||| ||||||||||||| ||||| || | ||||||||||||||| |||||||| ||||||||||||||| ||||| | |||| ||||| |||| || |
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| T |
29381046 |
actcaatgtgtatggtgcgccaatagcaggatgtctaggaatgttcttaacatatccaaattgcctcagcacgtgctccggcaagtgtggacaataacat |
29381145 |
T |
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| Q |
186 |
gacttgccgcacattatccaccctgaaaaccaaa |
219 |
Q |
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||| ||| ||||||||||||||||||||||||| |
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| T |
29381146 |
gacatgcaacacattatccaccctgaaaaccaaa |
29381179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 47851358 - 47851461
Alignment:
| Q |
119 |
tctaggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagatgacttgccgcacattatccaccctgaaaaccaa |
218 |
Q |
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||||||||| | |||||||||| |||||||||| ||||| |||||| |||| || ||| || ||||| |||||||||||||| |||||||||||||| |
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| T |
47851358 |
tctaggaatagtttgaacatatccaaattgcctccgcacacgctctggcaagtgtgttcgaaaacatgacatgccgcacattatctaccctgaaaaccaa |
47851457 |
T |
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| Q |
219 |
atga |
222 |
Q |
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|||| |
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| T |
47851458 |
atga |
47851461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 18295822 - 18296023
Alignment:
| Q |
21 |
ccacgatcttctttagatatcggatgcatattataatcctaaaaagcctgttccatctgataagtactcaacgtgtatggtgcgctaatagtagaaggtc |
120 |
Q |
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||||| ||||||| ||| ||| |||||| ||||||||||| ||||||| | || |||||| | | ||||| | || |||||| ||||| || | || |
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| T |
18295822 |
ccacggtcttcttcagaaatcagatgcagattataatcctggaaagcctctgccttctgatgaatgctcaatgagtgcggtgcggcaatagcaggatttc |
18295921 |
T |
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| Q |
121 |
taggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagatgacttgccgcacattatccaccctgaaaaccaaat |
220 |
Q |
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||||||| | |||||||||| |||||||||||||||| |||||| |||| || ||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
18295922 |
taggaatagtttgaacatatccaaattgcctcagcacacgctctggcaagtgtgttcgaaaacatgacatgccgcacattatccaccctgaaaaccaaat |
18296021 |
T |
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| Q |
221 |
ga |
222 |
Q |
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|| |
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| T |
18296022 |
ga |
18296023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 40609297 - 40609161
Alignment:
| Q |
86 |
actcaacgtgtatggtgcgctaatagtagaaggtctaggaatgttctgaacatatctaaattgcctcagcacatgctctgaaaagtatggacgataagat |
185 |
Q |
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|||||| ||||||||||||| ||||| || | ||||||||||||| |||||||||| ||||||||||| ||| |||||| |||| ||||| |||| || |
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| T |
40609297 |
actcaatgtgtatggtgcgccaatagcaggatgtctaggaatgttatgaacatatccaaattgcctcaacacgcgctctggcaagtgtggacaataacat |
40609198 |
T |
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| Q |
186 |
gacttgccgcacattatccaccctgaaaaccaaatga |
222 |
Q |
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||| |||| |||||||| | ||||||||||||||| |
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| T |
40609197 |
gacatgccacacattatttagtctgaaaaccaaatga |
40609161 |
T |
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