View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_311 (Length: 221)

Name: NF6865A_low_311
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_311
NF6865A_low_311
[»] chr6 (13 HSPs)
chr6 (37-153)||(1831964-1832080)
chr6 (48-171)||(6465202-6465325)
chr6 (37-151)||(6473218-6473332)
chr6 (38-171)||(6526241-6526374)
chr6 (38-118)||(6457295-6457375)
chr6 (37-94)||(13035917-13035974)
chr6 (37-128)||(1839061-1839150)
chr6 (70-153)||(1827215-1827298)
chr6 (38-86)||(1822322-1822370)
chr6 (66-127)||(1845847-1845908)
chr6 (50-139)||(6516295-6516384)
chr6 (37-75)||(1827168-1827206)
chr6 (60-136)||(1841986-1842062)
[»] chr7 (4 HSPs)
chr7 (53-139)||(46383318-46383404)
chr7 (41-126)||(3754007-3754092)
chr7 (41-117)||(4046155-4046231)
chr7 (50-116)||(46383849-46383914)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 1831964 - 1832080
Alignment:
Q  37 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtat 136  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||   |||||    
T  1831964 cgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagagagtat 1832063  T
Q  137 aagccttacgcctattc 153  Q
    |||||| | ||||||||    
T  1832064 aagcctcaagcctattc 1832080  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 6465325 - 6465202
Alignment:
Q  48 tttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataagccttacgc 147  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||| | ||    
T  6465325 tttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagc 6465226  T
Q  148 ctattctcttacggcggattttat 171  Q
     ||||| || | ||| ||||||||    
T  6465225 ttattcactcatggctgattttat 6465202  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 6473218 - 6473332
Alignment:
Q  37 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtat 136  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||||| || ||||||||| ||||||||| ||| |||    
T  6473218 cgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggtaagaaatat 6473317  T
Q  137 aagccttacgcctat 151  Q
    |||||| | ||||||    
T  6473318 aagcctcaagcctat 6473332  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 6526374 - 6526241
Alignment:
Q  38 gggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtata 137  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| || |||||||| ||||||||||  |||||||    
T  6526374 gggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggggtagaaagtata 6526275  T
Q  138 agccttacgcctattctcttacggcggattttat 171  Q
    || || | ||||||||| | | ||| ||||||||    
T  6526274 agtctcaagcctattctgtcatggctgattttat 6526241  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 6457375 - 6457295
Alignment:
Q  38 gggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatcca 118  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  6457375 gggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatcca 6457295  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 13035917 - 13035974
Alignment:
Q  37 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaatt 94  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  13035917 cgggtttggaatttataatgaccatcattatcatttaggttactttctctatggaatt 13035974  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 1839061 - 1839150
Alignment:
Q  37 cgggtttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggta 128  Q
    |||||||||||||||| |||| |||||||||||||||||||| |||||||   ||||| ||||||   |||| |||||||||||||||||||    
T  1839061 cgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgc--acaaagattgatccaatttggggta 1839150  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 1827215 - 1827298
Alignment:
Q  70 tttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataagccttacgcctattc 153  Q
    ||||||||||||||||| | ||||| ||||||||||||| |||||| ||||||||||||  || ||||||||| | ||||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattc 1827298  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 1822322 - 1822370
Alignment:
Q  38 gggtttggaatttataatgaccatcattatcatttaggatactttctct 86  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  1822322 gggttttgaatttataatgaccatcattatcatttagaatactttctct 1822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 1845847 - 1845908
Alignment:
Q  66 atcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggt 127  Q
    |||||||| ||||||||||||  | |||| ||||||||||||| ||||||||||||||||||    
T  1845847 atcatttacgatactttctctacgaaatttcagtgcttgcaaagattgatccaatttggggt 1845908  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 6516295 - 6516384
Alignment:
Q  50 tataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataag 139  Q
    |||||||| ||||||||||| |||||||| ||||| | ||||||| |||||||||  || |||||||||   ||||||| ||||||||||    
T  6516295 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataag 6516384  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 1827168 - 1827206
Alignment:
Q  37 cgggtttggaatttataatgaccatcattatcatttagg 75  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1827168 cgggtttggaatttataacgaccatcattatcatttagg 1827206  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 1841986 - 1842062
Alignment:
Q  60 atcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtat 136  Q
    |||| ||||||||| | |||||||||| ||||||| || ||| ||| || |||||||||||||||| ||| ||||||    
T  1841986 atcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtat 1842062  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 46383404 - 46383318
Alignment:
Q  53 aatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttggggtacgaagtataag 139  Q
    ||||| |||||||||||||||||||| | ||||| ||||||||||||||| || || |||||||| |||||||||| ||||||||||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataag 46383318  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 3754007 - 3754092
Alignment:
Q  41 tttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatccaatttgggg 126  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| | ||||||| | || |||||||| ||||||||| |||||||    
T  3754007 tttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttgggg 3754092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 4046231 - 4046155
Alignment:
Q  41 tttggaatttataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatcc 117  Q
    |||||||| |||||||| ||||||||||||||||| || ||||| | |||||||  ||| |||||||| ||||||||    
T  4046231 tttggaatgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgcaaaaattgatcc 4046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 46383914 - 46383849
Alignment:
Q  50 tataatgaccatcattatcatttaggatactttctctttggaattacagtgcttgcaaacattgatc 116  Q
    |||||||| |||||| ||||||||||||| ||||||| ||||||| | |||||||| || |||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattgc-gtgcttgctaagattgatc 46383849  T

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