View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_317 (Length: 219)
Name: NF6865A_low_317
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_317 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 13881621 - 13881818
Alignment:
| Q |
13 |
atatgcatatagtttaggaagcttattatccatctcatcagtcacagcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatg |
112 |
Q |
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| T |
13881621 |
atatgcatatagttgaagaagcttaatatccatctcatcagtcacagcatcttgaagctgaaatagaagtacatacattaagtgtcagaaagaatgaatg |
13881720 |
T |
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| Q |
113 |
gtaccaatgtcataaaaagaggaacttatggctttaacaatttaacctgtttaacaagtttacgtatcatctttcccaagtttatataagagtataat |
210 |
Q |
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| T |
13881721 |
gtaccaatgtcataaaaagaggaacttatggctttaacaatttaacctgtttaacaagtttatgtatcatctttcccaagtttatataagggtataat |
13881818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 16022531 - 16022693
Alignment:
| Q |
13 |
atatgcatatagtttaggaagcttattatccatctcatcagtcacagcatcttgaagctgaaatagaagtacacgcattaagtgtcagaaagaatgaatg |
112 |
Q |
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|||||||||||||| | | ||||||||||||||||||||| || || || |||||||||||||||| |||||| | ||| ||||||||||||||||| |
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| T |
16022531 |
atatgcatatagttgaagcagcttattatccatctcatcactcgcaacagcttgaagctgaaataggagtacataattgaagggtcagaaagaatgaatg |
16022630 |
T |
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| Q |
113 |
gtaccaatgtcataaaaagaggaa-cttatggctttaacaatttaacctgtttaacaagttta |
174 |
Q |
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| T |
16022631 |
acatcaagcttataaaaagaggaattttatggctttatgcatttaacctgtttaacaagttta |
16022693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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