View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_318 (Length: 219)
Name: NF6865A_low_318
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_318 |
 | |
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| [»] scaffold0131 (1 HSPs) |
| | |
|
| [»] scaffold1469 (1 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
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| [»] scaffold0029 (2 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
| | |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0131 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 939 - 747
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| ||| |||||||| |||||||||| ||||| |||||||||||||| || ||| |||||| |||||||||||||| ||||||||| || |||| |
|
|
| T |
939 |
gaagaaaatgtgtaagatttaggtttataaagttgtgtttgatgattagtaagagtttccgatctataatgttgttgttgatcataattggatgaaaata |
840 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
839 |
gcatgttatgtatgaatttgggattttctgtattaatgcttgattgggctggattgttgttgtttatgtttagttgctgttcctgttgatgtc |
747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 28889451 - 28889643
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| |||||||| |||||||||||| | ||||||||| |||||||||||||| | ||||||| | | |||||||||| ||||||||| || || | |
|
|
| T |
28889451 |
gaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtatcgctgttgttgatcataattggatgaaaaga |
28889550 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
28889551 |
gcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattgttgttgttaatgtttagttgctgttcctgttgatgtc |
28889643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 28896155 - 28896347
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| |||||||| |||||||||||| | ||||||||| |||||||||||||| | ||||||| | | |||||||||| ||||||||| || || | |
|
|
| T |
28896155 |
gaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtatcgctgttgttgatcataattggatgaaaaga |
28896254 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28896255 |
gcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattgttgttgttaatgtttagttgctgttcctgttgatgtc |
28896347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 28924981 - 28925173
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| |||||||| |||||||||||| | ||||||||| |||||||||||||| | ||||||| | | |||||||||| ||||||||| || || | |
|
|
| T |
28924981 |
gaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtatcgctgttgttgatcataattggatgaaaaga |
28925080 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28925081 |
gcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattgttgttgttaatgtttagttgctgttcctgttgatgtc |
28925173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 28909403 - 28909595
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| |||||||| |||||||||||| | ||||||||| |||||||||||||| | ||||||| | | |||||||||| ||||||||| || || | |
|
|
| T |
28909403 |
gaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtatcgctgttgttgatcataattggatgaaaaga |
28909502 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
28909503 |
gcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattgttgttgttaatgtttagttgttgttcctgttgatgtc |
28909595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 28931095 - 28931287
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| ||| |||| |||||||||||| | ||||||||| |||||||||||||| | ||||||| | | |||||||||| ||||||||| || || | |
|
|
| T |
28931095 |
gaagaaaatgggtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtatcgctgttgttgatcataattggatgaaaaga |
28931194 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28931195 |
gcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattgttgttgttaatgtttagttgctgttcctgttgatgtc |
28931287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 28945798 - 28945990
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| |||||||| |||||||||||| | ||||||||| |||||||||||||| | ||||||| | | |||||||||| ||||||||| || || | |
|
|
| T |
28945798 |
gaagaaaatgcgtaaaattcaggtttatgacgttgtatttaatgattagtatgatttcctaatctgtatcgctgttgttgatcataattggatgaaaaga |
28945897 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
28945898 |
gcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattgttgttgttaatgtttagttgttgttcctgttgatgtc |
28945990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 20820152 - 20819968
Alignment:
| Q |
21 |
atgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaatagcatgtt |
120 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||| |||||| ||||||||| | ||||||||||| |
|
|
| T |
20820152 |
atgcataagattcaggtttataatgttgtatttgatgatgagtatgatcc-ctaattagtattgttgtagttgatcataattggatgcaaatagcatgtt |
20820054 |
T |
|
| Q |
121 |
atgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
20820053 |
atgtatgaatttggaattttctgtatgaatgcttgattgggctaaattgttgttgtttatgtttagttgctgttcctgttgatgtc |
20819968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 20827252 - 20827068
Alignment:
| Q |
21 |
atgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaatagcatgtt |
120 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||| |||||| ||||||||| | ||||||||||| |
|
|
| T |
20827252 |
atgcataagattcaggtttataatgttgtatttgatgatgagtatgatcc-ctaattagtattgttgtagttgatcataattggatgcaaatagcatgtt |
20827154 |
T |
|
| Q |
121 |
atgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
20827153 |
atgtatgaatttggaattttctgtatgaatgcttgattgggctaaattgttgttgtttatgtttagttgctgttcctgttgatgtc |
20827068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 20772911 - 20772718
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||| ||||||| ||||||||| || | || |
|
|
| T |
20772911 |
gaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctactctatattgttgatgttgatcataattggatgaaagta |
20772812 |
T |
|
| Q |
114 |
gcatgttatgtatgaa-tttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
| || | ||| ||||| ||| ||| ||||| ||||||| |||||||| | ||||||| |||| ||||| | ||| |||| || |||||||| |
|
|
| T |
20772811 |
gaatataatggatgaagttttggaagttctgaatgaatgtttgattggagttaattgttgttgttgatgttgaattgttgtttcttttgatgtc |
20772718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 20781686 - 20781493
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||||||||||||||| |||||| | ||| ||||| ||||| ||||||| ||||||||| || | || |
|
|
| T |
20781686 |
gaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattattatgatttcctactctatattgttgatgttgatcataattggatgaaagta |
20781587 |
T |
|
| Q |
114 |
gcatgttatgtatgaa-tttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
| || | ||| ||||| ||| ||| ||||| ||||||| |||||||| | ||||||| |||| ||||| | ||| |||| || |||||||| |
|
|
| T |
20781586 |
gaatataatggatgaagttttggaagttctgaatgaatgtttgattggagttaattgttgttgttgatgttgaattgttgtttcttttgatgtc |
20781493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 24930053 - 24930130
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataatt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| | ||||| |||||| |
|
|
| T |
24930053 |
gtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctaatctataatgttgatattgatcataatt |
24930130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1469 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold1469
Description:
Target: scaffold1469; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 1297 - 1129
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggaggagaata |
113 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| || ||||||||||||||||| | ||||||| | ||||||||||||| ||||||||| || |||| |
|
|
| T |
1297 |
gaagaaaatgcgtaagattcaggtttacaatgttataattgatgattagtatgatttcctaatctgtattgttgttgttgatcataattggatgaaaata |
1198 |
T |
|
| Q |
114 |
gcatgttatgtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgt |
182 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
1197 |
gcatgttatgtgtgaatttggaagtttctgtatgaatgcttgattgggctgaattgttgttgttgatgt |
1129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 79615 - 79798
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttga-tgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttat |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| | ||||| || ||||| | ||||| |||||| | || ||||| || | || |
|
|
| T |
79615 |
gtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgat |
79714 |
T |
|
| Q |
123 |
gtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||| |||||||| |
|
|
| T |
79715 |
ggatgaattttggaagttctgtatgaatgcttgattgggctgaattgatgttgttgatgtttagttgctgttccttttgatgtc |
79798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 16146955 - 16147138
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttga-tgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttat |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| | ||||| || ||||| | ||||| |||||| | || ||||| || | || |
|
|
| T |
16146955 |
gtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgat |
16147054 |
T |
|
| Q |
123 |
gtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||| |||||||| |
|
|
| T |
16147055 |
ggatgaattttggaagttctgtatgaatgcttgattgggctgaattgatgttgttgatgtttagttgctgttccttttgatgtc |
16147138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 16091005 - 16090822
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttga-tgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttat |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| | ||||| || ||||| | ||||| |||||| | || ||||| || | || |
|
|
| T |
16091005 |
gtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgat |
16090906 |
T |
|
| Q |
123 |
gtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
| |||||||| ||| ||||| |||||||||||||||||||| |||| || |||| ||||||||||||||||||| |||||||| |
|
|
| T |
16090905 |
ggatgaattttggaagttctgaatgaatgcttgattgggctgaattgatgttgttgatgtttagttgctgttccttttgatgtc |
16090822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 29181234 - 29181417
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttga-tgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttat |
122 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||||| | ||||| || ||||| | ||||| |||||| | || ||||| || | || |
|
|
| T |
29181234 |
gtaagaatcaggcttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgat |
29181333 |
T |
|
| Q |
123 |
gtatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||| |||||||| |
|
|
| T |
29181334 |
ggatgaattttggaagttctgtatgaatgcttgattgggctgaattgatgttgttgatgtttagttgctgttccttttgatgtc |
29181417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 2966894 - 2966719
Alignment:
| Q |
26 |
taagattcaggtttataatgttgta-tttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttatg |
123 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||||||| | ||||| || ||||| ||||||| |||||||| || ||||| || | ||| |
|
|
| T |
2966894 |
taagaatcaggtttttaatgttgtactttgatgattagtatgatttcttaatccatgttgttgatgttgatcgtaattggaatgaaaatagaatatgatg |
2966795 |
T |
|
| Q |
124 |
tatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgt |
199 |
Q |
| |
|
|||||||| ||| || ||||||||||||||| ||||||| ||||||| |||| |||||||||| |||||||||| |
|
|
| T |
2966794 |
gatgaattttggaagttttgtatgaatgcttgaatgggctgaattgttgttgttgatgtttagtttctgttcctgt |
2966719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 3857479 - 3857570
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgga |
105 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||||||||||| |||||| | ||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
3857479 |
gaagaaaatgtgtaagatttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattgttgatgttgattataattgga |
3857570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 2465303 - 2465212
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgga |
105 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||| ||||||||||||| |||||| | ||| ||| | ||||| ||||||| ||||||||| |
|
|
| T |
2465303 |
gaagaaaatgtgtaagatttaggtttataatgttatatttgatgattaatatgatttcctactctgtattgttgatgttgatcataattgga |
2465212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 14865768 - 14865593
Alignment:
| Q |
33 |
caggtttataatgttgtatttg-atgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttatgtatgaat |
130 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| | ||||| || ||||| | ||||| |||||| | || ||||| || | ||| |||||| |
|
|
| T |
14865768 |
caggtttataatgttgtacttggatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaat |
14865669 |
T |
|
| Q |
131 |
ttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcctgttgatgtc |
206 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
14865668 |
tttggaagttctgtatgaatgcttgattgggctgaattgttgttgttgatgtttagttgttgttcctgttgatgtc |
14865593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 12033570 - 12033743
Alignment:
| Q |
26 |
taagattcaggtttataatgttgta-tttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttatg |
123 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| |||||||||| | |||||||| ||||| ||||||| |||||| | || ||||| || | ||| |
|
|
| T |
12033570 |
taagaatcaggtttataatgttgtactttgatgtttagtatgatttcttaatctatgttgttgatgttgatcgtaattgaattgaaaatagaatatgatg |
12033669 |
T |
|
| Q |
124 |
tatgaatttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagttgctgttcct |
197 |
Q |
| |
|
|||||||| ||| || ||||||||||||||| ||||||| ||||||| |||| |||||||||| |||||||| |
|
|
| T |
12033670 |
gatgaattttggaagttttgtatgaatgcttgaatgggctgaattgttgttgttgatgtttagtttctgttcct |
12033743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 19235182 - 19235270
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataatt |
102 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| | ||||| |||||| |
|
|
| T |
19235182 |
gaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctaatctatattgttgatattgatcataatt |
19235270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 17131655 - 17131497
Alignment:
| Q |
32 |
tcaggtttataatgttgta-tttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgg-aggagaatagcatgttatgtatgaa |
129 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| | |||||||| ||||| |||||||| ||||||| | || ||||| || | ||| ||||| |
|
|
| T |
17131655 |
tcaggtttataatgttgtactttgatgtttagtatgatttcttaatctatgttgttgatgttgattgtaattggaatgaaaatagaatatgatggatgaa |
17131556 |
T |
|
| Q |
130 |
tttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagtt |
188 |
Q |
| |
|
||| ||| | || |||||||||| | || |||| ||||||| |||| |||||||||| |
|
|
| T |
17131555 |
ttttggaagctttgcatgaatgcttaaatgagctgaattgttgttgttgatgtttagtt |
17131497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 9099185 - 9099273
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataatt |
102 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| | ||||| |||||| |
|
|
| T |
9099185 |
gaagaaaatgtgtaagaatcaggtttataatgttgtatttgatgattagtatgatttcctaatctatattgttgatattgatcataatt |
9099273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 29097790 - 29097719
Alignment:
| Q |
31 |
ttcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataatt |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||| | ||||| |||||| |
|
|
| T |
29097790 |
ttcaggtttatactgttgtatttgatgattagtatgatttcctaatctataatgttgatattgatcataatt |
29097719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 21364604 - 21364684
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgga |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| |||||| | ||| ||| | ||||| ||||||| ||||||||| |
|
|
| T |
21364604 |
gtaagacttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattgttgatgttgatcataattgga |
21364684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 23968586 - 23968666
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgga |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| |||||| | ||| ||| | ||||| ||||||| ||||||||| |
|
|
| T |
23968586 |
gtaagacttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattgttgatgttgatcataattgga |
23968666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 21710741 - 21710584
Alignment:
| Q |
32 |
tcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttatgtatgaat |
130 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||| |||||||| ||||| ||||||| ||||||||| || ||||| || | ||| |||||| |
|
|
| T |
21710741 |
tcaggtttataatgttatacttgatgtttagtatgattccttaatctatgttgttgatgttgatcataattggaatgaaaatagaatatgatggatgaat |
21710642 |
T |
|
| Q |
131 |
ttgggattttctgtatgaatgcttgattgggctggattgttgctgttaatgtttagtt |
188 |
Q |
| |
|
|| ||| | ||||||||||||||| ||||||| ||||||| |||| |||||||||| |
|
|
| T |
21710641 |
tttggaagctttgtatgaatgcttgaatgggctgaattgttgttgttgatgtttagtt |
21710584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 91317 - 91408
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgga |
105 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||||||||||| |||||| | ||| ||| | || || ||||||| ||||||||| |
|
|
| T |
91317 |
gaagaaaatgtgtaagatttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattggtgatgttgatcataattgga |
91408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 97043 - 97134
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctatcatgttgttgttgattataattgga |
105 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||||||||||| |||||| | ||| ||| | || || ||||||| ||||||||| |
|
|
| T |
97043 |
gaagaaaatgtgtaagatttaggtttataatgttgtatttgatgattaatatgatttcctactctgtattggtgatgttgatcataattgga |
97134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 16177 - 16243
Alignment:
| Q |
14 |
gaagaatatgcgtaagattcaggtttataatgttgtatttgatgattagtatgatcttctaatctat |
80 |
Q |
| |
|
|||||| ||| | |||| ||||||| || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16177 |
gaagaaaatgtgcaagaatcaggttcatgatgttgtatttgatgattagtatgattttctaatctat |
16243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 12877 - 12823
Alignment:
| Q |
34 |
aggtttataatgttgtatttg-atgattagtatgatcttctaatctatcatgttg |
87 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||||| |||||| |
|
|
| T |
12877 |
aggtttataatgttgtatttgtatgattagtatgatttcctaatctataatgttg |
12823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 50096 - 50242
Alignment:
| Q |
25 |
gtaagattcaggtttataatgttgtatttgat-gattagtatgatcttctaatctatcatgttgttgttgattataattggag-gagaatagcatgttat |
122 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||||||||| | ||||| || ||||| | ||||| |||||| | || ||||| || | || |
|
|
| T |
50096 |
gtaagaatcaggtttataatgttatatttgaaagattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgat |
50195 |
T |
|
| Q |
123 |
gtatgaatttgggattttctgtatgaatgcttgattgggctggattg |
169 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50196 |
ggatgaattttggaagttctgtatgaatgcttgattgggctgaattg |
50242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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