View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_327 (Length: 215)
Name: NF6865A_low_327
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_327 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4123730 - 4123944
Alignment:
| Q |
1 |
gtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatg |
100 |
Q |
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| T |
4123730 |
gtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatg |
4123829 |
T |
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| Q |
101 |
gaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcatt |
200 |
Q |
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| T |
4123830 |
gaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcatt |
4123929 |
T |
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| Q |
201 |
atcactttttcttga |
215 |
Q |
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| T |
4123930 |
atcactttttcttga |
4123944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4153080 - 4153294
Alignment:
| Q |
1 |
gtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatg |
100 |
Q |
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| T |
4153080 |
gtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttccattccatg |
4153179 |
T |
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| Q |
101 |
gaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcatt |
200 |
Q |
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| T |
4153180 |
gacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcatt |
4153279 |
T |
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| Q |
201 |
atcactttttcttga |
215 |
Q |
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| T |
4153280 |
atcactttttcttga |
4153294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 4163438 - 4163647
Alignment:
| Q |
6 |
ataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggacca |
105 |
Q |
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| T |
4163438 |
ataagtagttccatctttgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggacca |
4163537 |
T |
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| Q |
106 |
gttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcac |
205 |
Q |
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| T |
4163538 |
gttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaagaaggatcattttcac |
4163637 |
T |
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| Q |
206 |
tttttcttga |
215 |
Q |
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| T |
4163638 |
tttttcttga |
4163647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 4134347 - 4134488
Alignment:
| Q |
73 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
172 |
Q |
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| T |
4134347 |
gttccgagaaaaacccttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
4134446 |
T |
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| Q |
173 |
ctgaataatgtcctgaagaaggatcattatcactttttcttg |
214 |
Q |
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| T |
4134447 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttg |
4134488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 4145149 - 4145290
Alignment:
| Q |
73 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
172 |
Q |
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| T |
4145149 |
gttccgagaaaaactcttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
4145248 |
T |
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| Q |
173 |
ctgaataatgtcctgaagaaggatcattatcactttttcttg |
214 |
Q |
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| T |
4145249 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttg |
4145290 |
T |
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