View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_335 (Length: 211)
Name: NF6865A_low_335
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_335 |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 43324 - 43126
Alignment:
| Q |
5 |
aagtctttatcaagaagtcggacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaagtc |
104 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43324 |
aagtctttatcaagaagtcggacacaggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaattc |
43225 |
T |
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| Q |
105 |
ccgaccaataccccgaaaggtgaagatgcgataaatctattagttctgtgacacacaacagataggcactacgcaccgaataacgtccattcttttcag |
203 |
Q |
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| T |
43224 |
ccgaccaataccccggaaggtgaagatgcgataaatctattagttttgtgacacacaacagataggcactacgcaccgaataacgtccattcttttcag |
43126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 42079697 - 42079504
Alignment:
| Q |
9 |
ctttatcaagaagtcggacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaagtcccga |
108 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| || |||||| |||||||||| |||||| |
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| T |
42079697 |
ctttatcaagaagtcgaacacgggttggtaggcagcctcgtcacatccgccatatcaaattcttaacctttgacggagatttgagcttccaaattcccga |
42079598 |
T |
|
| Q |
109 |
ccaataccccgaaaggtgaagatgcgataaatctattagttctgtgacacacaacagataggcactacgcaccgaataacgtccattcttttca |
202 |
Q |
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| T |
42079597 |
ccaataccccggacgatgaagatgtaataagtccgctaactcagtaacacacaaccggtaagcactacgcaccaaataacgaccattcttttca |
42079504 |
T |
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Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 17392893 - 17393087
Alignment:
| Q |
9 |
ctttatcaagaagtcggacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaagtcccga |
108 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |||||||||| |||||||||| |||| |||| | | |||| | || ||||||| ||||| |
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| T |
17392893 |
ctttatcaagaagtcgaacacaagttggtaagcagcctcaacacatccgctatatcaaatttttaacctttggaggagatatgagtttccaaatccccga |
17392992 |
T |
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| Q |
109 |
ccaataccccgaaaggtgaagatgcgataaatctattagttctgtgacacacaacagataggcactacgcaccgaataacgtccattcttttcag |
203 |
Q |
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| T |
17392993 |
ccaataccccggacaataaagatgtgataaatctactaactcggtaacacacaaccggtaagcactacgcactgaataacgaccattcttttcag |
17393087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9958445 - 9958397
Alignment:
| Q |
26 |
acacgggttggtaagcagcctcgacacatccgccatatcaaattcttaa |
74 |
Q |
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| T |
9958445 |
acacgggttggtaaacatcctcgacacatacgccaaattaaattcttaa |
9958397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 27393942 - 27394094
Alignment:
| Q |
9 |
ctttatcaagaagtcggacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaagtcccga |
108 |
Q |
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|||||| ||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||| |||||||||| || ||| |
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| T |
27393942 |
ctttattaagaaatagaacacgggttggtaagcagcctcgacacatccaccatatcaaattcttaccctttgacggagatttgagcttccaaattctcga |
27394041 |
T |
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| Q |
109 |
ccaataccccgaaaggtgaagatgcgataaatctattagttctgtgacacaca |
161 |
Q |
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| T |
27394042 |
tcaatacccgagacggtgaagatgcgataaatatattagtttagtgacacaca |
27394094 |
T |
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Target: scaffold0019 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 73735 - 73858
Alignment:
| Q |
9 |
ctttatcaagaagtcggacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaagtcccga |
108 |
Q |
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|||||||||||||||| ||| ||||||| | |||||||| |||||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| |
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| T |
73735 |
ctttatcaagaagtcgaacatatgttggtaggtagcctcgatacatccgccatatcaaattcttaacctttggcggagatttgagcttccaaattcccga |
73834 |
T |
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| Q |
109 |
ccaataccccgaaaggtgaagatg |
132 |
Q |
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| T |
73835 |
ccaataccccgaacgatgaagatg |
73858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 14994265 - 14994157
Alignment:
| Q |
9 |
ctttatcaagaagtcggacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaatcttttgcgaagatttcagcttccaaagtcccga |
108 |
Q |
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||||| |||||| ||| || |||||| || |||||||||||||||| ||||||||||||||||| |||| || |||||| ||||| |||| |||| | |
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| T |
14994265 |
ctttaccaagaaatcgagcatgggttgataggcagcctcgacacatctaccatatcaaattcttaacctttgacggagatttgagctttcaaattcccaa |
14994166 |
T |
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| Q |
109 |
ccaataccc |
117 |
Q |
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||||||||| |
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| T |
14994165 |
ccaataccc |
14994157 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 14263145 - 14263088
Alignment:
| Q |
138 |
aatctattagttctgtgacacacaacagataggcactacgcaccgaataacgtccatt |
195 |
Q |
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|||| |||| ||||||||| |||||| ||| |||||||| ||||||||||||||||| |
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| T |
14263145 |
aatcaattaattctgtgacgcacaacctataagcactacgaaccgaataacgtccatt |
14263088 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 31951141 - 31951092
Alignment:
| Q |
25 |
gacacgggttggtaagcagcctcgacacatccgccatatcaaattcttaa |
74 |
Q |
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||||||||||||||| || ||||||||||| ||||| || |||||||||| |
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| T |
31951141 |
gacacgggttggtaatcatcctcgacacatgcgccaaattaaattcttaa |
31951092 |
T |
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