View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_336 (Length: 210)
Name: NF6865A_low_336
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_336 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 16205715 - 16205589
Alignment:
| Q |
66 |
acatcatgatgaacatgagaaaaaatcggttctaaagaaagtgaaggcaaaggctaagaaaattaaggacacaatcacaaagcatggtcaccatgatgat |
165 |
Q |
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| T |
16205715 |
acatcatgatgaacatgagaaaaaatcggttctaaagaaagtgaaggcaaaggctaagaaaattaaggacacaatcacaaagcatggtcaccatgatgat |
16205616 |
T |
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| Q |
166 |
catgaccatgaccatgttcatgatcat |
192 |
Q |
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| T |
16205615 |
catgaacatggtcatggtcatggtcat |
16205589 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 45551732 - 45551674
Alignment:
| Q |
82 |
gagaaaaaatcggttctaaagaaagtgaaggcaaaggctaagaaaattaaggacacaat |
140 |
Q |
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| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaat |
45551674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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