View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_337 (Length: 210)
Name: NF6865A_low_337
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_337 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 3067526 - 3067320
Alignment:
| Q |
1 |
gaatggcacttattggcatcaaaacgattatacgcatctaaagccttttattgaagtacaatgtattctagcttgtatggaagactgcatgtattattat |
100 |
Q |
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| T |
3067526 |
gaatggcacttattggcatcaaaacgattatacgcatctaaagccttttattgaagtacaatgtattatagcttgtatggaagactgcatgtattattat |
3067427 |
T |
|
| Q |
101 |
ttgtttatattctggcacattgatatttgatatatccttgatgttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttatt |
200 |
Q |
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| T |
3067426 |
ttgtttatattctggcacattgatatttgatatatccttgatgttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttatt |
3067327 |
T |
|
| Q |
201 |
ctctaat |
207 |
Q |
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||||||| |
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| T |
3067326 |
ctctaat |
3067320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 3052679 - 3052618
Alignment:
| Q |
144 |
ttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
207 |
Q |
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| T |
3052679 |
ttcaatttcatatgatatcaacaacttgactatataaata--gaatagttatttattctctaat |
3052618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 6769824 - 6769879
Alignment:
| Q |
149 |
tttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaa |
206 |
Q |
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| T |
6769824 |
tttcatatgttatcaacaacttcactctata--taattaatagttatttattctctaa |
6769879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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