View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_34 (Length: 396)
Name: NF6865A_low_34
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 147 - 395
Target Start/End: Complemental strand, 41433725 - 41433477
Alignment:
| Q |
147 |
tatattgatattcgattatttatttgctaaaactcttttgtaatgaaatgtcttcagattattgttttcgatataaatagtcaaaggaaaatgctattat |
246 |
Q |
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| T |
41433725 |
tatattgatattcgattatttatttgctaaaactcttttctaatgaaatgtcttcagattattgttttcgatataaatagtcaaaggaaaatgctattat |
41433626 |
T |
|
| Q |
247 |
gcacgacaacatttgtcgtgtaaaacacacgactgaaatttaacattactcagaaacttattttcagtgttttctaaattcaatttgatccaaaggtact |
346 |
Q |
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| T |
41433625 |
gcacgacaacatttgtcgtgtaaaacacacgaccgaaatttaacattactcagaaacttattttcagtgttttctaaattcaatttgatccaaaggcact |
41433526 |
T |
|
| Q |
347 |
aacataaattctagtaccacttttaaattgaaattcatctcttattgtg |
395 |
Q |
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| T |
41433525 |
aacatagattctagtaccacttttacattgaaattcatcttttattgtg |
41433477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 230 - 395
Target Start/End: Complemental strand, 8029022 - 8028857
Alignment:
| Q |
230 |
aaggaaaatgctattatgcacgacaacatttgtcgtgtaaaacacacgactgaaatttaacattactcagaaacttattttcagtgttttctaaattcaa |
329 |
Q |
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| T |
8029022 |
aaggaaaatgctattatacacgataacatttgtcgtgtaaaacacatgagtgaaacttaacactactcagaaacttattttcagtgttttctaaattcaa |
8028923 |
T |
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| Q |
330 |
tttgatccaaaggtactaacataaattctagtaccacttttaaattgaaattcatctcttattgtg |
395 |
Q |
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| T |
8028922 |
tttgatccaaaggtagtaacatagattctagtagcacttttacattgaaattcatctcttattgtg |
8028857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 395
Target Start/End: Complemental strand, 30689582 - 30689422
Alignment:
| Q |
232 |
ggaaaatgctattatgcacgacaacatttgtcgtgtaaaacacacgactgaaatttaacattactcagaaacttattttcagtgttttctaaattcaatt |
331 |
Q |
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||||||| || |||||||||||| ||||||||||||||||||||||| ||| | | || |||||||| | |||||||||||||||||||||||||||| |
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| T |
30689582 |
ggaaaatactgttatgcacgacatcatttgtcgtgtaaaacacacga---aaactcaccactactcagatatttattttcagtgttttctaaattcaatt |
30689486 |
T |
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| Q |
332 |
tgatccaaaggtactaacataaattctagtaccacttttaaattgaaattcatctcttattgtg |
395 |
Q |
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| T |
30689485 |
tgatctaaaattactaatatagattctagtaccacttttacattaaaattaatctcttattgtg |
30689422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 29827968 - 29827924
Alignment:
| Q |
234 |
aaaatgctattatgcacgacaacatttgtcgtgtaaaacacacga |
278 |
Q |
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| T |
29827968 |
aaaatgctattatatacgacaacatttgtcgtgtaaaacacacga |
29827924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 16467473 - 16467554
Alignment:
| Q |
155 |
tattcgattatttatttgctaaaactc------ttttgtaatgaaatgtcttcagattattgttttcgatataaatagtcaaa |
231 |
Q |
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| T |
16467473 |
tattcgattatttatttgctaaaactcttctaattttgt-atgaaatgtcttcacaatatcattttcgatataaatagtcaaa |
16467554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 35381822 - 35381792
Alignment:
| Q |
155 |
tattcgattatttatttgctaaaactctttt |
185 |
Q |
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| T |
35381822 |
tattcgattatttatttgctaaaactctttt |
35381792 |
T |
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