View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_341 (Length: 208)
Name: NF6865A_low_341
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_341 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 37181366 - 37181187
Alignment:
| Q |
12 |
atgagatggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttag |
111 |
Q |
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| T |
37181366 |
atgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttag |
37181267 |
T |
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| Q |
112 |
ttcaacttcctgtgtttcactttggcaaaagcatttggttgcctacattagttataaccccaaaatagtccaatgtgatg |
191 |
Q |
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| T |
37181266 |
ttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacattagttataaccccaaaatagtccaatgtgatg |
37181187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 37180391 - 37180512
Alignment:
| Q |
23 |
aggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga-gaactat-aagagcttttgcaattttaagttagttcaacttc |
120 |
Q |
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| T |
37180391 |
agggatagtgggtggtcttatatagattgagatagatttgaaggagggtagttcggaagaaccatcaagagcttttgcaatttttagttagttcaactta |
37180490 |
T |
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| Q |
121 |
ctgtgtttcactttggcaaaag |
142 |
Q |
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| T |
37180491 |
ttgggtttcactttgacaaaag |
37180512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 37189463 - 37189365
Alignment:
| Q |
23 |
aggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga-gaactat-aagagcttttgcaattttaagttagttcaactt |
119 |
Q |
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| T |
37189463 |
agggatagtgggtgatcttatatagattgagagagatttgaaggagggtagttcggatgaaccatcaagagcttttgcaatttttagttagttcaactt |
37189365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 38704443 - 38704569
Alignment:
| Q |
21 |
aaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaacttc |
120 |
Q |
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| T |
38704443 |
aaagggatagtggatggttttatatagagtagaagagatttgaatcaaggtagcttggagaataataaaagcatttgcaatcttaagttacttcaacttc |
38704542 |
T |
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| Q |
121 |
ctgtgtttcactttggcaaaagcattt |
147 |
Q |
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| T |
38704543 |
ctgtgttttactttcacaaaaccattt |
38704569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 37188052 - 37188147
Alignment:
| Q |
12 |
atgagatggaaaggggtagtggatggtct--tatatagagtgagagagatttgaaggagagttgtttggagaacta-taagagcttttgcaatttt |
104 |
Q |
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| T |
37188052 |
atgagaaggaaaggagtagtggatggtcttatatatagagtaagcaagatttgaaggagggtagtttggagaacaactacgagcttttgcaatttt |
37188147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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