View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_343 (Length: 207)

Name: NF6865A_low_343
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_343
NF6865A_low_343
[»] chr1 (4 HSPs)
chr1 (20-187)||(18438563-18438727)
chr1 (20-187)||(18449421-18449585)
chr1 (20-187)||(18454514-18454678)
chr1 (99-150)||(42080703-42080754)
[»] chr2 (5 HSPs)
chr2 (20-187)||(31320217-31320395)
chr2 (23-160)||(9446963-9447111)
chr2 (99-157)||(21949909-21949967)
chr2 (99-147)||(14555896-14555944)
chr2 (99-159)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (20-167)||(31610025-31610183)
chr5 (98-153)||(11888191-11888246)
chr5 (99-150)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (99-147)||(8425057-8425105)
chr7 (99-150)||(49094557-49094608)
chr7 (99-150)||(38836146-38836197)
chr7 (99-159)||(30559374-30559434)
[»] chr6 (1 HSPs)
chr6 (98-150)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (99-150)||(2048991-2049042)
chr4 (99-150)||(39735820-39735871)
chr4 (99-148)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (99-147)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (100-145)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (99-159)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 18438727 - 18438563
Alignment:
Q  20 gcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438727 gcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccct 18438631  T
Q  120 ttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 187  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18438630 ttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18438563  T

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Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 18449585 - 18449421
Alignment:
Q  20 gcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449585 gcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccct 18449489  T
Q  120 ttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 187  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18449488 ttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18449421  T

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Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 18454678 - 18454514
Alignment:
Q  20 gcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454678 gcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtcagattgcttttgatcacaccct 18454582  T
Q  120 ttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 187  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18454581 ttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18454514  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    ||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 31320395 - 31320217
Alignment:
Q  20 gcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca-----------gattgctttt 108  Q
    ||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||           ||||||||||    
T  31320395 gcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaactttcaacaagacaatcacatatatttgggattgctttt 31320296  T
Q  109 gatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 187  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  31320295 gatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgcctcttttactcttc 31320217  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 9447111 - 9446963
Alignment:
Q  23 accatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca-----------gattgcttttgat 111  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  9447111 accatccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatatttgggattgcttttgat 9447012  T
Q  112 cacaccctttttggaacgcttttgtatgtgctcactactagtgttttgc 160  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447011 cacaccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttt 157  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 147  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 13698189 - 13698129
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 159  Q
    ||||||||||||||||||||||  ||||||   |||| |||||||||||||| ||| ||||    
T  13698189 gattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgctttg 13698129  T

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Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 31610183 - 31610025
Alignment:
Q  20 gcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc-----------agattgctttt 108  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||            ||||||||||    
T  31610183 gcaaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatatatttgggattgctttt 31610084  T
Q  109 gatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 167  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610083 gatcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  98 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagt 153  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 33417489 - 33417438
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  33417489 gattacttttgattacaccctttttagaacgaatttgtatgtgctcactact 33417438  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 147  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 38836197 - 38836146
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    ||||||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  38836197 gattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 30559374 - 30559434
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 159  Q
    ||||||||||||| ||||||||||||||||   ||| ||||||||||| ||| ||| ||||    
T  30559374 gattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgctttg 30559434  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  98 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 150  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcacta 148  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 147  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 19168234 - 19168189
Alignment:
Q  100 attgcttttgatcacaccctttttggaacgcttttgtatgtgctca 145  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctca 19168189  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 3830691 - 3830751
Alignment:
Q  99 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 159  Q
    |||||||||||||||||| |||  |||||||  |||| |||||||||||||| ||| ||||    
T  3830691 gattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgctttg 3830751  T

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