View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_344 (Length: 207)
Name: NF6865A_low_344
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_344 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 17006038 - 17006238
Alignment:
| Q |
1 |
gttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaacc |
100 |
Q |
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| T |
17006038 |
gttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaacc |
17006137 |
T |
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| Q |
101 |
agnnnnnnnnnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaat |
200 |
Q |
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| T |
17006138 |
ag--aaaaaaaggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttgaacttccatattggaaggacaat |
17006235 |
T |
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| Q |
201 |
ctt |
203 |
Q |
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| T |
17006236 |
ctt |
17006238 |
T |
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Target: scaffold1075 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 3050 - 2855
Alignment:
| Q |
10 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
109 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccag--aaaaa |
2953 |
T |
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| Q |
110 |
nnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgc |
207 |
Q |
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| T |
2952 |
aaggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgc |
2855 |
T |
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