View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_345 (Length: 206)
Name: NF6865A_low_345
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_345 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 10274651 - 10274788
Alignment:
| Q |
19 |
atgaaatagggtaatgataaaatgaagttagataaagaaaagttcataaaaagccaaagactaatgaagtggaaataaactttggcttacataagcaaaa |
118 |
Q |
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| T |
10274651 |
atgaaatagggtaatgataaaatgaagttagataaagaaaagttcataaaaagccaaagactaatgaagtggaaataaactttggcttacataagcaaaa |
10274750 |
T |
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| Q |
119 |
tgtgtcatccaaacttaaccgttcatttacaatttctt |
156 |
Q |
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| T |
10274751 |
tgtgtcatccaaacttaaccgttcatttacaatttctt |
10274788 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 10266736 - 10266805
Alignment:
| Q |
19 |
atgaaatagggtaatgataaaatgaagttagataaagaaaagttcataaaaagccaaagactaatgaagt |
88 |
Q |
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| T |
10266736 |
atgaaatggggtaacgataaaataaagttagataaagaaatgttcagaaaaagccaaagactaatgaagt |
10266805 |
T |
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