View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_346 (Length: 206)
Name: NF6865A_low_346
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_346 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 25801903 - 25802075
Alignment:
| Q |
16 |
cactttcaaattacctaattacccgcaaaccagcacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaata |
115 |
Q |
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| T |
25801903 |
cactttcaaattacctaattaccctcaaaccagcacaagtccaaatcatgccccttccaattataaatacataacaacagttaccattacatatgcaata |
25802002 |
T |
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| Q |
116 |
tcacacaaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
188 |
Q |
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| T |
25802003 |
tcacacaaacaaaaagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
25802075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 25816102 - 25816168
Alignment:
| Q |
122 |
aaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
188 |
Q |
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| T |
25816102 |
aaacaaatagagaagaaacagaacaatgaaatacaacgagatatcacatttcagccacccaaaacac |
25816168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 112617 - 112456
Alignment:
| Q |
16 |
cactttcaaattacctaattacccgcaaaccagcacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaata |
115 |
Q |
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|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112617 |
cactttcaaattacttaattaccctcaaaccaacacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaata |
112518 |
T |
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| Q |
116 |
tcacacaaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
188 |
Q |
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| T |
112517 |
tcacacaaacaaa-----------cagaacaatgaaatacagtgagatatcacatttcagccacccaaaacac |
112456 |
T |
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