View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_348 (Length: 205)
Name: NF6865A_low_348
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_348 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 29467152 - 29467304
Alignment:
| Q |
23 |
aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467152 |
aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct |
29467251 |
T |
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| Q |
123 |
ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttct |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467252 |
ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttct |
29467304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 29452676 - 29452830
Alignment:
| Q |
21 |
caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc |
120 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29452676 |
caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc |
29452775 |
T |
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| Q |
121 |
ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttct |
175 |
Q |
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|||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
29452776 |
ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttct |
29452830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 29424035 - 29423884
Alignment:
| Q |
24 |
aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt |
123 |
Q |
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|||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||| |
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| T |
29424035 |
aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt |
29423936 |
T |
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| Q |
124 |
tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttct |
175 |
Q |
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||||| | |||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
29423935 |
tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttct |
29423884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 29442684 - 29442838
Alignment:
| Q |
21 |
caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc |
120 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| || |||||||||| ||| |
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| T |
29442684 |
caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc |
29442783 |
T |
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| Q |
121 |
ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttct |
175 |
Q |
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|||||| | |||| |||| ||| ||||| | |||||||||||||||||||| |
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| T |
29442784 |
ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttct |
29442838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 14551143 - 14550990
Alignment:
| Q |
22 |
aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc |
121 |
Q |
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|||||||||||||| ||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14551143 |
aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc |
14551044 |
T |
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| Q |
122 |
tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttct |
175 |
Q |
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|||| || | ||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
14551043 |
tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttct |
14550990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
| Q |
22 |
aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc |
77 |
Q |
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|||||||||||||||||| ||||||| |||||| ||||| |||| ||||||||||| |
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| T |
8572827 |
aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc |
8572882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
| Q |
22 |
aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa |
74 |
Q |
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||||||||||||| || | |||||||||||||||||| | |||| |||||||| |
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| T |
9292751 |
aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa |
9292699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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