View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_35 (Length: 395)
Name: NF6865A_low_35
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 17613960 - 17613628
Alignment:
| Q |
19 |
tcatctaaattcatgacagtaaaaagttatttgctgttatgttggaagtacaagaggaacttgaagacgaggcataacaaaaggggttnnnnnnnnn-ga |
117 |
Q |
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||||||||||| || ||||||||||||||||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||||||| || |
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| T |
17613960 |
tcatctaaattgatagcagtaaaaagttatttgctattatgatggaagtacaataggagcttgaagagaaggcataacaaaaggggttaaaaaaaagaga |
17613861 |
T |
|
| Q |
118 |
gagaattgaggaaaaa-gggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatttacaaacattcaac |
216 |
Q |
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|||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17613860 |
gagaattgaggaaaaaagggtcagaagttgccacaa-gtgatgacacatttttcttctaattggccaacctgggcatcttctaatttacaaacattcaac |
17613762 |
T |
|
| Q |
217 |
atggcttcacaatatatatcacaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatgtctg |
316 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
17613761 |
atggcttcaaaatatatatcacaacaagtgaatctttcctcaag--gtacatacatagatatcaatccctgtacactaggttctgcgtgatatatgtccg |
17613664 |
T |
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| Q |
317 |
ttagcaatgaaattaaggcgtaaagacaccgtcatc |
352 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |
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| T |
17613663 |
ttagcactgaaattaaggcgtaaagacaccatcatc |
17613628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 17693678 - 17693361
Alignment:
| Q |
19 |
tcatctaaattcatgacagtaaaaagttatttgctgttatgttggaagtacaagaggaacttgaagacgaggcataacaaaaggggttnnnnnnnnngag |
118 |
Q |
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|||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||| || |
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| T |
17693678 |
tcatataaattcatggcagtaaaaagttgtttgctgttatgttggaa------------cttgaagacaaggcataacaaaagtggttaaaaaaaacaag |
17693591 |
T |
|
| Q |
119 |
agaattgaggaaaaagggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatttacaaacattcaacat |
218 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693590 |
agaattgaggaaaaagggtctgaagttgccacaa-gtgatgacacatttttcttctaatttgccaacctgggcatcttctaatttacaaacattcaacat |
17693492 |
T |
|
| Q |
219 |
ggcttcacaatatatatcacaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatgtctgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||| | | | ||| |
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| T |
17693491 |
ggcttcacaatatatatcacaacaagtgaacctttcctcaag--gtacata-atagatatcaaaccctgtacactaagttctgcatgatagacgcccgtt |
17693395 |
T |
|
| Q |
319 |
agcaatgaaattaaggcgtaaagacaccgtcatc |
352 |
Q |
| |
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|||| |||||||||||| |||||||||| ||||| |
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| T |
17693394 |
agcactgaaattaaggcataaagacaccatcatc |
17693361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 17671324 - 17671209
Alignment:
| Q |
237 |
acaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatgtctgttagcaatgaaattaaggcg |
336 |
Q |
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|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||| |
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| T |
17671324 |
acaacaagtgaaccattcatcaagtggtacatacatagatatcaatccctgtacactaggttctgcatgatagatgtccgttagcactgaaactaaggcg |
17671225 |
T |
|
| Q |
337 |
taaagacaccgtcatc |
352 |
Q |
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||||||||| ||||| |
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| T |
17671224 |
aaaagacaccatcatc |
17671209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 17671422 - 17671327
Alignment:
| Q |
116 |
gagagaattgaggaaaaa-gggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatttacaaacat |
211 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17671422 |
gagagaattgaggaaaaaagggtcagaagttgccacaa-gtgatgacacatttttcttctaatttgccaacctgggcatcttctaatttacaaacat |
17671327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 17657914 - 17657819
Alignment:
| Q |
116 |
gagagaattgaggaaaa-agggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatttacaaacat |
211 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
17657914 |
gagagaattgaggaaaatagggtcagaagttgccacaa-gtgatgacacatttttcttctaatttgcaaacctgagcatcttctaatttacaaacat |
17657819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 17671563 - 17671476
Alignment:
| Q |
19 |
tcatctaaattcatgacagtaaaaagttatttgctgttatgttggaagtacaagaggaacttgaagacgaggcataacaaaaggggtt |
106 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||| ||||||||||| |||| |||| |||| ||||||||||||||||||| |
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| T |
17671563 |
tcatctaaattgatagcagtaaaaagttatttgctattatgatggaagtacaataggagcttggagacaaggcataacaaaaggggtt |
17671476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 17657816 - 17657758
Alignment:
| Q |
237 |
acaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactag |
295 |
Q |
| |
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|||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||| |
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| T |
17657816 |
acaacaagtgaaccattcatcaagtggtacatacatagatatcaattcctgtacactag |
17657758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 17613569 - 17613540
Alignment:
| Q |
357 |
aaggttaggtcactcttcacaagcaccata |
386 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17613569 |
aaggttaggtcactcttcacaagcaccata |
17613540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 17626754 - 17626725
Alignment:
| Q |
357 |
aaggttaggtcactcttcacaagcaccata |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
17626754 |
aaggttaggtcactcttcacaagcaccata |
17626725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 17671150 - 17671121
Alignment:
| Q |
357 |
aaggttaggtcactcttcacaagcaccata |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
17671150 |
aaggttaggtcactcttcacaagcaccata |
17671121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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