View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_353 (Length: 203)
Name: NF6865A_low_353
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_353 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 32879935 - 32880109
Alignment:
| Q |
10 |
aaatgaaccacgaaagggtgtagactccacttgacaaagatctatccccaatagatgatttagaagaatatgtataaagacattcatatgtctttttgat |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32879935 |
aaataaaccacgaaagggtgtagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagtcattcatatgtctttttgat |
32880034 |
T |
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| Q |
110 |
ttagaatctccgccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
184 |
Q |
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| T |
32880035 |
ttagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
32880109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 32898807 - 32898981
Alignment:
| Q |
10 |
aaatgaaccacgaaagggtgtagactccacttgacaaagatctatccccaatagatgatttagaagaatatgtataaagacattcatatgtctttttgat |
109 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
32898807 |
aaatgaaccacgaaaggatgtagactccacttgacaaagatctatacactatagatgatttagaagaatgtgtataaagtcattcatatgtctttttgat |
32898906 |
T |
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| Q |
110 |
ttagaatctccgccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
184 |
Q |
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| T |
32898907 |
ttagaatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
32898981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 32884768 - 32884937
Alignment:
| Q |
10 |
aaatgaaccacgaaagggtgtagactccacttgacaaagatctatccccaatagatgatttagaagaatatgtataaagacattcatatgtctttttgat |
109 |
Q |
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|||||||||||||| || |||| |||||||||||||||||| ||| | | ||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
32884768 |
aaatgaaccacgaatggatgtacactccacttgacaaagatatatg----aaacatgatttagaagaatatgtataaaggcattcatatgtcttttttat |
32884863 |
T |
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| Q |
110 |
ttagaatctccgccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
184 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32884864 |
atagaatctcctcct-cttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt |
32884937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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