View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_357 (Length: 202)

Name: NF6865A_low_357
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_357
NF6865A_low_357
[»] chr7 (3 HSPs)
chr7 (23-187)||(3930049-3930213)
chr7 (22-178)||(3928706-3928862)
chr7 (44-187)||(21317471-21317614)
[»] chr2 (1 HSPs)
chr2 (44-187)||(13576245-13576388)
[»] chr8 (5 HSPs)
chr8 (47-187)||(43479762-43479902)
chr8 (47-187)||(38799395-38799535)
chr8 (47-187)||(38821982-38822122)
chr8 (47-186)||(25865600-25865739)
chr8 (23-153)||(26592044-26592174)
[»] scaffold0197 (1 HSPs)
scaffold0197 (44-187)||(30909-31051)
[»] chr5 (3 HSPs)
chr5 (47-187)||(12531392-12531532)
chr5 (47-187)||(12547087-12547227)
chr5 (123-184)||(9866748-9866809)
[»] chr4 (4 HSPs)
chr4 (41-187)||(24860440-24860586)
chr4 (107-147)||(44771097-44771137)
chr4 (53-132)||(40035830-40035909)
chr4 (22-142)||(34748630-34748750)
[»] chr1 (2 HSPs)
chr1 (95-180)||(17769257-17769342)
chr1 (126-180)||(1539209-1539263)
[»] chr3 (1 HSPs)
chr3 (123-180)||(27440873-27440930)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 3e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 3930213 - 3930049
Alignment:
Q  23 ccaggaacggtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctc 122  Q
    |||||||| |||||| | || || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3930213 ccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatcgctc 3930114  T
Q  123 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  3930113 aggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaa 3930049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 3928862 - 3928706
Alignment:
Q  22 accaggaacggtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgct 121  Q
    ||||||||| ||||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||    
T  3928862 accaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgct 3928763  T
Q  122 caggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaa 178  Q
    ||||||||||||||||||||| |||| ||||  || ||||||||||| |||||||||    
T  3928762 caggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaa 3928706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 21317471 - 21317614
Alignment:
Q  44 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctca 143  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||||||||||| |  | |||||| |||||||||||||||||||||| |||||||    
T  21317471 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctca 21317570  T
Q  144 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    |||| ||||| |||||||||||||| ||||||||||| ||||||    
T  21317571 gattccagagcagtgctgtttctgctcttcaagaagcggctgaa 21317614  T

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Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 13576245 - 13576388
Alignment:
Q  44 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctca 143  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||  |||| ||||||||||||||||| ||||||     
T  13576245 gaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaattgctcaggatttcaaaacggatctcc 13576344  T
Q  144 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    | ||||| || |||||||||||||| ||||||||||||||||||    
T  13576345 gttttcaaagcagtgctgtttctgctcttcaagaagctgctgaa 13576388  T

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Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 43479902 - 43479762
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||| |    
T  43479902 atccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggt 43479803  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    | |||||||| ||||||||||| ||||||||||| ||||||    
T  43479802 tccagagtagcgctgtttctgctcttcaagaagccgctgaa 43479762  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 38799395 - 38799535
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | |||||| |||| ||||| |||||||| || ||||| ||||    
T  38799395 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38799494  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    | ||||| || || ||||| || ||||||||||||||||||    
T  38799495 tccagagcagcgcagtttccgctcttcaagaagctgctgaa 38799535  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 38822122 - 38821982
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | |||||| |||| ||||| |||||||| || ||||| ||||    
T  38822122 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38822023  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    | ||||| || || ||||| || ||||||||||||||||||    
T  38822022 tccagagcagcgcagtttccgctcttcaagaagctgctgaa 38821982  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 25865600 - 25865739
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||| ||||||||| | ||  | || |||||||||||  |  | |||||| |||| ||||||||||||||||| ||||| ||||    
T  25865600 atccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagat 25865699  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctga 186  Q
    ||||||||  |||||||  ||||||||| |||||||||||    
T  25865700 ttcagagtcatgctgttcttgcacttcaggaagctgctga 25865739  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 26592044 - 26592174
Alignment:
Q  23 ccaggaacggtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctc 122  Q
    |||||||| |||||| | || || ||||| ||||| ||||||||||| || ||||||||| | |||||||| |||||  |  | |||||| | || ||||    
T  26592044 ccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctc 26592143  T
Q  123 aggatttcaaaactgatctcagatttcagag 153  Q
    |||||||||| || |||||| | ||||||||    
T  26592144 aggatttcaagacggatctccgttttcagag 26592174  T

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Target: scaffold0197 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 30909 - 31051
Alignment:
Q  44 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctca 143  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||| ||||||| |  | |||||| ||||||||||||||||||||||  ||||||    
T  30909 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctca 31007  T
Q  144 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||    
T  31008 gattccagagcagtgctgtttctgctcttcaagaagctgctgaa 31051  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 12531392 - 12531532
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | |||||| |||||||||| ||||||||||| |||||| |||    
T  12531392 atccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgat 12531491  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    | || || |||||||||||||| ||||||||||||||||||    
T  12531492 tccaaagcagtgctgtttctgctcttcaagaagctgctgaa 12531532  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 12547227 - 12547087
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | |||||| |||||||||| ||||||||||| |||||| |||    
T  12547227 atccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgat 12547128  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    | || || |||||||||||||| ||||||||||||||||||    
T  12547127 tccaaagcagtgctgtttctgctcttcaagaagctgctgaa 12547087  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 9866809 - 9866748
Alignment:
Q  123 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgct 184  Q
    |||||||||| |||||||| || ||  ||||||||| ||||||||| |||||||||||||||    
T  9866809 aggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgct 9866748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 24860440 - 24860586
Alignment:
Q  41 cgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaaaactgatc 140  Q
    ||||||||||| ||||| || || ||||| |||||||||||  | ||||||||||||||| |  | |||||| |||||||||| ||||||||||| ||||    
T  24860440 cgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatc 24860539  T
Q  141 tcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaa 187  Q
    || | || |||||||| ||||||||||| ||||||||||||||||||    
T  24860540 tccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaa 24860586  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 44771137 - 44771097
Alignment:
Q  107 gttcgtaaaatcgctcaggatttcaaaactgatctcagatt 147  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  44771137 gttcgtgaaatcgctcaggatttcaaaaccgatctcagatt 44771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
Q  53 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgctcaggatttcaa 132  Q
    |||||||||||||| ||||||||  | || ||||| || |||||||| || ||||||||| |||| |||||||| |||||    
T  40035830 aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa 40035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 34748630 - 34748750
Alignment:
Q  22 accaggaacggtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtaaaatcgct 121  Q
    ||||||||| |||||  | || || ||||| ||||| ||||||||||| || || |||||  | ||||| || |||||  |  |||||||| | ||||||    
T  34748630 accaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgct 34748729  T
Q  122 caggatttcaaaactgatctc 142  Q
    ||||||||||| |||||||||    
T  34748730 caggatttcaagactgatctc 34748750  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 17769342 - 17769257
Alignment:
Q  95 ttccaaagattggttcgtaaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagc 180  Q
    ||||||||||| ||| |  ||||| |  ||||||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||    
T  17769342 ttccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagc 17769257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 1539263 - 1539209
Alignment:
Q  126 atttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagc 180  Q
    |||||||||| |||||| ||||| |||||||| |||||||| | |||||||||||    
T  1539263 atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagc 1539209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 27440873 - 27440930
Alignment:
Q  123 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagc 180  Q
    ||||||||||||| |||||| ||||| |||||||   ||||||||| |||||||||||    
T  27440873 aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagc 27440930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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